RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	MT1M	Q8N339	61 aa		5.32	□□□□□ -1.56
PHGDH-231	ENST00000641939	PSPHP1	O15172	72 aa		5.29	□□□□□ -1.56
PHGDH-231	ENST00000641939		Q1T7F1	81 aa		5.29	□□□□□ -1.56
PHGDH-231	ENST00000641939	GPR98	Q8WXG9	6306 aa		5.27	□□□□□ -1.57
PHGDH-231	ENST00000641939		K7ERS5	55 aa		5.26	□□□□□ -1.57
PHGDH-231	ENST00000641939	KRTAP4-9	Q9BYQ8	210 aa		5.24	□□□□□ -1.57
PHGDH-231	ENST00000641939	KRTAP12-3	P60328	96 aa		5.23	□□□□□ -1.57
PHGDH-231	ENST00000641939	KRTAP25-1	Q3LHN0	102 aa		5.21	□□□□□ -1.58
PHGDH-231	ENST00000641939	KRTAP4-3	Q9BYR4	195 aa		5.18	□□□□□ -1.58
PHGDH-231	ENST00000641939		A6NED7	52 aa		5.12	□□□□□ -1.59
PHGDH-231	ENST00000641939	LCE4A	Q5TA78	99 aa		5.12	□□□□□ -1.59
PHGDH-231	ENST00000641939	LCE1D	Q5T752	114 aa		5.1	□□□□□ -1.59
PHGDH-231	ENST00000641939	KRTAP4-7	Q9BYR0	210 aa		5.08	□□□□□ -1.6
PHGDH-231	ENST00000641939	RPS28	P62857	69 aa	Known RBP	5.05	□□□□□ -1.6
PHGDH-231	ENST00000641939	MT4	P47944	62 aa		5.04	□□□□□ -1.6
PHGDH-231	ENST00000641939	KRTAP5-4	Q6L8H1	288 aa		5.03	□□□□□ -1.6
PHGDH-231	ENST00000641939	HMCN1	Q96RW7	5635 aa		5.03	□□□□□ -1.6
PHGDH-231	ENST00000641939	KRTAP23-1	A1A580	65 aa		5.02	□□□□□ -1.61
PHGDH-231	ENST00000641939	PCP4	P48539	62 aa		5.01	□□□□□ -1.61
PHGDH-231	ENST00000641939	CDC42SE1	Q9NRR8	79 aa		4.98	□□□□□ -1.61
PHGDH-231	ENST00000641939	KRTAP19-4	Q3LI73	84 aa		4.95	□□□□□ -1.62
PHGDH-231	ENST00000641939	KRTAP15-1	Q3LI76	137 aa		4.91	□□□□□ -1.62
PHGDH-231	ENST00000641939	KRTAP4-6	Q9BYQ5	205 aa		4.91	□□□□□ -1.62
PHGDH-231	ENST00000641939	ROMO1	P60602	79 aa		4.9	□□□□□ -1.63
PHGDH-231	ENST00000641939	AHNAK2	Q8IVF2	5795 aa		4.87	□□□□□ -1.63
PHGDH-231	ENST00000641939	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.87	□□□□□ -1.63
PHGDH-231	ENST00000641939	KRTAP5-10	Q6L8G5	202 aa		4.84	□□□□□ -1.63
PHGDH-231	ENST00000641939	LOC100996750	A0A140TA64	210 aa		4.82	□□□□□ -1.64
PHGDH-231	ENST00000641939	LCE3C	Q5T5A8	94 aa		4.82	□□□□□ -1.64
PHGDH-231	ENST00000641939	KRTAP20-2	Q3LI61	65 aa		4.75	□□□□□ -1.65
PHGDH-231	ENST00000641939	SPRR5	A0A1B0GTR4	108 aa		4.74	□□□□□ -1.65
PHGDH-231	ENST00000641939	KRTAP12-4	P60329	112 aa		4.74	□□□□□ -1.65
PHGDH-231	ENST00000641939	SYNE1	Q8NF91	8797 aa	Known RBP	4.7	□□□□□ -1.66
PHGDH-231	ENST00000641939	KRTAP5-7	Q6L8G8	165 aa		4.69	□□□□□ -1.66
PHGDH-231	ENST00000641939	KRTAP5-3	Q6L8H2	238 aa		4.68	□□□□□ -1.66
PHGDH-231	ENST00000641939	MT1A	P04731	61 aa		4.56	□□□□□ -1.68
PHGDH-231	ENST00000641939	KRTAP9-6	A8MVA2	160 aa		4.54	□□□□□ -1.68
PHGDH-231	ENST00000641939	KRTAP6-1	Q3LI64	71 aa		4.52	□□□□□ -1.69
PHGDH-231	ENST00000641939	BRK1	Q8WUW1	75 aa		4.44	□□□□□ -1.7
PHGDH-231	ENST00000641939	KRTAP5-2	Q701N4	177 aa		4.43	□□□□□ -1.7
PHGDH-231	ENST00000641939	KRTAP9-4	Q9BYQ2	154 aa		4.4	□□□□□ -1.71
PHGDH-231	ENST00000641939	KRTAP6-2	Q3LI66	62 aa		4.32	□□□□□ -1.72
PHGDH-231	ENST00000641939	KRTAP4-11	Q9BYQ6	195 aa		4.32	□□□□□ -1.72
PHGDH-231	ENST00000641939	KRTAP5-8	O75690	187 aa		4.17	□□□□□ -1.74
PHGDH-231	ENST00000641939	MT3	P25713	68 aa		4.17	□□□□□ -1.74
PHGDH-231	ENST00000641939	PMAIP1	Q13794	54 aa		4.17	□□□□□ -1.74
PHGDH-231	ENST00000641939	OBSCN	Q5VST9	7968 aa		4.12	□□□□□ -1.75
PHGDH-231	ENST00000641939	MUC5AC	P98088	5654 aa		4.05	□□□□□ -1.76
PHGDH-231	ENST00000641939	AHNAK	Q09666	5890 aa	Known RBP	4.03	□□□□□ -1.76
PHGDH-231	ENST00000641939	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.02	□□□□□ -1.77
PHGDH-231	ENST00000641939	PRAC1	Q96KF2	57 aa		4.01	□□□□□ -1.77
PHGDH-231	ENST00000641939	KRTAP9-9	Q9BYP9	154 aa		3.98	□□□□□ -1.77
PHGDH-231	ENST00000641939	KRTAP5-1	Q6L8H4	278 aa		3.95	□□□□□ -1.78
PHGDH-231	ENST00000641939	PRO0628	Q9UI54	55 aa		3.89	□□□□□ -1.79
PHGDH-231	ENST00000641939	LCE1E	Q5T753	118 aa		3.82	□□□□□ -1.8
PHGDH-231	ENST00000641939	KTN1-AS1	Q86SY8	53 aa		3.71	□□□□□ -1.82
PHGDH-231	ENST00000641939	KRTAP4-2	Q9BYR5	136 aa		3.59	□□□□□ -1.83
PHGDH-231	ENST00000641939	LCE1B	Q5T7P3	118 aa		3.58	□□□□□ -1.84
PHGDH-231	ENST00000641939	SVIP	Q8NHG7	77 aa		3.56	□□□□□ -1.84
PHGDH-231	ENST00000641939	LCE1C	Q5T751	118 aa		3.54	□□□□□ -1.84
PHGDH-231	ENST00000641939	LCE3D	Q9BYE3	92 aa		3.49	□□□□□ -1.85
PHGDH-231	ENST00000641939	LUZP6	Q538Z0	58 aa		3.4	□□□□□ -1.87
PHGDH-231	ENST00000641939	LCE3E	Q5T5B0	92 aa		3.29	□□□□□ -1.88
PHGDH-231	ENST00000641939	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.23	□□□□□ -1.89
PHGDH-231	ENST00000641939	KRTAP4-12	Q9BQ66	201 aa		3.23	□□□□□ -1.89
PHGDH-231	ENST00000641939	KRTAP5-11	Q6L8G4	156 aa		3.2	□□□□□ -1.9
PHGDH-231	ENST00000641939	LCE1F	Q5T754	118 aa		3.11	□□□□□ -1.91
PHGDH-231	ENST00000641939	KRTAP21-2	Q3LI59	83 aa		2.99	□□□□□ -1.93
PHGDH-231	ENST00000641939	PHGR1	C9JFL3	82 aa		2.84	□□□□□ -1.95
PHGDH-231	ENST00000641939	NDUFAF8	A1L188	74 aa		2.73	□□□□□ -1.97
PHGDH-231	ENST00000641939	KRTAP4-4	Q9BYR3	166 aa		2.72	□□□□□ -1.97
PHGDH-231	ENST00000641939		H3BS24	57 aa		2.57	□□□□□ -2
PHGDH-231	ENST00000641939	MUC19	Q7Z5P9	8384 aa		2.55	□□□□□ -2
PHGDH-231	ENST00000641939	PRM1	P04553	51 aa		2.5	□□□□□ -2.01
PHGDH-231	ENST00000641939	INE1	O15225	51 aa		2.19	□□□□□ -2.06
PHGDH-231	ENST00000641939		A0A0A0MQY5	61 aa		2.18	□□□□□ -2.06
PHGDH-231	ENST00000641939	KRTAP21-1	Q3LI58	79 aa		2.16	□□□□□ -2.06
PHGDH-231	ENST00000641939	MUC16	Q8WXI7	14507 aa		1.85	□□□□□ -2.11

Retrieved 78 of 20,778 RNA–protein pairs in 60.8 ms