RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-215	ENST00000636674	KRTAP19-6	Q3LI70	58 aa		5.46	□□□□□ -1.54
CLN6-215	ENST00000636674	KRTAP9-9	Q9BYP9	154 aa		5.4	□□□□□ -1.55
CLN6-215	ENST00000636674	KRTAP9-4	Q9BYQ2	154 aa		5.4	□□□□□ -1.55
CLN6-215	ENST00000636674	KRTAP19-5	Q3LI72	72 aa		5.38	□□□□□ -1.55
CLN6-215	ENST00000636674	LCE3C	Q5T5A8	94 aa		5.35	□□□□□ -1.55
CLN6-215	ENST00000636674	KRTAP4-2	Q9BYR5	136 aa		5.35	□□□□□ -1.55
CLN6-215	ENST00000636674	KRTAP9-7	A8MTY7	169 aa		5.3	□□□□□ -1.56
CLN6-215	ENST00000636674	MACF1	Q9UPN3	7388 aa	Known RBP	5.26	□□□□□ -1.57
CLN6-215	ENST00000636674	KRTAP4-9	Q9BYQ8	210 aa		5.22	□□□□□ -1.57
CLN6-215	ENST00000636674	LCE1D	Q5T752	114 aa		5.21	□□□□□ -1.57
CLN6-215	ENST00000636674	KRTAP19-7	Q3SYF9	63 aa		5.16	□□□□□ -1.58
CLN6-215	ENST00000636674	LCE5A	Q5TCM9	118 aa		5.16	□□□□□ -1.58
CLN6-215	ENST00000636674	KRTAP9-6	A8MVA2	160 aa		5.14	□□□□□ -1.59
CLN6-215	ENST00000636674	SYNE2	Q8WXH0	6885 aa	Known RBP	5.14	□□□□□ -1.59
CLN6-215	ENST00000636674	KRTAP6-3	Q3LI67	103 aa		5.11	□□□□□ -1.59
CLN6-215	ENST00000636674	KMT2D	O14686	5537 aa		5.1	□□□□□ -1.59
CLN6-215	ENST00000636674	KRTAP2-3	P0C7H8	128 aa		5.07	□□□□□ -1.6
CLN6-215	ENST00000636674	KRTAP2-4	Q9BYR9	128 aa		5.07	□□□□□ -1.6
CLN6-215	ENST00000636674	KRTAP2-1	Q9BYU5	128 aa		5.07	□□□□□ -1.6
CLN6-215	ENST00000636674	MT1L	Q93083	61 aa		5.02	□□□□□ -1.61
CLN6-215	ENST00000636674	MT1E	P04732	61 aa		5.01	□□□□□ -1.61
CLN6-215	ENST00000636674	KRTAP4-12	Q9BQ66	201 aa		5.01	□□□□□ -1.61
CLN6-215	ENST00000636674	KRTAP5-9	P26371	169 aa		4.92	□□□□□ -1.62
CLN6-215	ENST00000636674	MUC12	Q9UKN1	5478 aa		4.92	□□□□□ -1.62
CLN6-215	ENST00000636674	LCE4A	Q5TA78	99 aa		4.92	□□□□□ -1.62
CLN6-215	ENST00000636674	NEB	P20929	6669 aa		4.87	□□□□□ -1.63
CLN6-215	ENST00000636674	SPRR2F	Q96RM1	72 aa		4.79	□□□□□ -1.64
CLN6-215	ENST00000636674	MDN1	Q9NU22	5596 aa		4.77	□□□□□ -1.65
CLN6-215	ENST00000636674	KRTAP4-11	Q9BYQ6	195 aa		4.75	□□□□□ -1.65
CLN6-215	ENST00000636674	SPRR2E	P22531	72 aa		4.68	□□□□□ -1.66
CLN6-215	ENST00000636674	SPRR2B	P35325	72 aa		4.68	□□□□□ -1.66
CLN6-215	ENST00000636674	SPRR2A	P35326	72 aa		4.68	□□□□□ -1.66
CLN6-215	ENST00000636674	KRTAP19-3	Q7Z4W3	81 aa		4.67	□□□□□ -1.66
CLN6-215	ENST00000636674	MT1M	Q8N339	61 aa		4.67	□□□□□ -1.66
CLN6-215	ENST00000636674	MT1G	P13640	62 aa		4.67	□□□□□ -1.66
CLN6-215	ENST00000636674	KRTAP20-1	Q3LI63	56 aa		4.66	□□□□□ -1.66
CLN6-215	ENST00000636674	LCE1A	Q5T7P2	110 aa		4.65	□□□□□ -1.66
CLN6-215	ENST00000636674	KRTAP4-3	Q9BYR4	195 aa		4.65	□□□□□ -1.66
CLN6-215	ENST00000636674	SPRR2D	P22532	72 aa		4.53	□□□□□ -1.68
CLN6-215	ENST00000636674	MT3	P25713	68 aa		4.5	□□□□□ -1.69
CLN6-215	ENST00000636674	LCE1F	Q5T754	118 aa		4.47	□□□□□ -1.69
CLN6-215	ENST00000636674	KRTAP2-2	Q9BYT5	123 aa		4.44	□□□□□ -1.7
CLN6-215	ENST00000636674	KRTAP12-4	P60329	112 aa		4.42	□□□□□ -1.7
CLN6-215	ENST00000636674	MT1A	P04731	61 aa		4.31	□□□□□ -1.72
CLN6-215	ENST00000636674	KRTAP6-1	Q3LI64	71 aa		4.23	□□□□□ -1.73
CLN6-215	ENST00000636674	DST	Q03001	7570 aa	Known RBP	4.23	□□□□□ -1.73
CLN6-215	ENST00000636674	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.16	□□□□□ -1.74
CLN6-215	ENST00000636674	LCE3D	Q9BYE3	92 aa		4.12	□□□□□ -1.75
CLN6-215	ENST00000636674	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.11	□□□□□ -1.75
CLN6-215	ENST00000636674	SYNE1	Q8NF91	8797 aa	Known RBP	4.09	□□□□□ -1.75
CLN6-215	ENST00000636674	LCE3E	Q5T5B0	92 aa		4.09	□□□□□ -1.75
CLN6-215	ENST00000636674	KRTAP5-4	Q6L8H1	288 aa		3.99	□□□□□ -1.77
CLN6-215	ENST00000636674	MT4	P47944	62 aa		3.94	□□□□□ -1.78
CLN6-215	ENST00000636674	HMCN1	Q96RW7	5635 aa		3.93	□□□□□ -1.78
CLN6-215	ENST00000636674	PRM1	P04553	51 aa		3.92	□□□□□ -1.78
CLN6-215	ENST00000636674	GPR98	Q8WXG9	6306 aa		3.84	□□□□□ -1.79
CLN6-215	ENST00000636674	KRTAP6-2	Q3LI66	62 aa		3.8	□□□□□ -1.8
CLN6-215	ENST00000636674	AHNAK2	Q8IVF2	5795 aa		3.76	□□□□□ -1.81
CLN6-215	ENST00000636674	KRTAP20-2	Q3LI61	65 aa		3.74	□□□□□ -1.81
CLN6-215	ENST00000636674	LCE1E	Q5T753	118 aa		3.7	□□□□□ -1.82
CLN6-215	ENST00000636674	KRTAP5-10	Q6L8G5	202 aa		3.65	□□□□□ -1.83
CLN6-215	ENST00000636674	KRTAP5-2	Q701N4	177 aa		3.52	□□□□□ -1.85
CLN6-215	ENST00000636674	KRTAP5-7	Q6L8G8	165 aa		3.49	□□□□□ -1.85
CLN6-215	ENST00000636674	OBSCN	Q5VST9	7968 aa		3.49	□□□□□ -1.85
CLN6-215	ENST00000636674	KRTAP4-4	Q9BYR3	166 aa		3.27	□□□□□ -1.89
CLN6-215	ENST00000636674	KRTAP5-8	O75690	187 aa		3.27	□□□□□ -1.89
CLN6-215	ENST00000636674	KRTAP5-1	Q6L8H4	278 aa		3.25	□□□□□ -1.89
CLN6-215	ENST00000636674	MUC5AC	P98088	5654 aa		3.17	□□□□□ -1.9
CLN6-215	ENST00000636674	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.08	□□□□□ -1.92
CLN6-215	ENST00000636674	KRTAP5-11	Q6L8G4	156 aa		3.06	□□□□□ -1.92
CLN6-215	ENST00000636674	AHNAK	Q09666	5890 aa	Known RBP	3.06	□□□□□ -1.92
CLN6-215	ENST00000636674	LCE1B	Q5T7P3	118 aa		2.95	□□□□□ -1.94
CLN6-215	ENST00000636674	LCE1C	Q5T751	118 aa		2.93	□□□□□ -1.94
CLN6-215	ENST00000636674	KRTAP21-2	Q3LI59	83 aa		2.76	□□□□□ -1.97
CLN6-215	ENST00000636674	KRTAP21-1	Q3LI58	79 aa		2.53	□□□□□ -2
CLN6-215	ENST00000636674	MUC19	Q7Z5P9	8384 aa		2.23	□□□□□ -2.05
CLN6-215	ENST00000636674	PHGR1	C9JFL3	82 aa		2.18	□□□□□ -2.06
CLN6-215	ENST00000636674	MUC16	Q8WXI7	14507 aa		1.47	□□□□□ -2.17

Retrieved 78 of 20,778 RNA–protein pairs in 156.5 ms