RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 LOC100996750A0A140TA64 210 aa4.22□□□□□ -1.73
LINC00540-203ENST00000631321 KRTAP4-6Q9BYQ5 205 aa4.22□□□□□ -1.73
LINC00540-203ENST00000631321 KRTAP19-3Q7Z4W3 81 aa4.15□□□□□ -1.74
LINC00540-203ENST00000631321 FCGBPQ9Y6R7 5405 aaPredicted RBP4.15□□□□□ -1.75
LINC00540-203ENST00000631321 MT1GP13640 62 aa4.15□□□□□ -1.75
LINC00540-203ENST00000631321 MT1MQ8N339 61 aa4.15□□□□□ -1.75
LINC00540-203ENST00000631321 KRTAP4-3Q9BYR4 195 aa4.14□□□□□ -1.75
LINC00540-203ENST00000631321 FSIP2Q5CZC0 6907 aa4.11□□□□□ -1.75
LINC00540-203ENST00000631321 MUC12Q9UKN1 5478 aa4.1□□□□□ -1.75
LINC00540-203ENST00000631321 LCE5AQ5TCM9 118 aa4.03□□□□□ -1.76
LINC00540-203ENST00000631321 SPRR2FQ96RM1 72 aa3.95□□□□□ -1.78
LINC00540-203ENST00000631321 CRCT1Q9UGL9 99 aa3.93□□□□□ -1.78
LINC00540-203ENST00000631321 KRTAP9-6A0A140TA67 174 aa3.93□□□□□ -1.78
LINC00540-203ENST00000631321 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.92□□□□□ -1.78
LINC00540-203ENST00000631321 KRTAP9-2Q9BYQ4 174 aa3.9□□□□□ -1.78
LINC00540-203ENST00000631321 MACF1Q9UPN3 7388 aaKnown RBP3.82□□□□□ -1.8
LINC00540-203ENST00000631321 KRTAP12-4P60329 112 aa3.82□□□□□ -1.8
LINC00540-203ENST00000631321 DSTQ03001 7570 aaKnown RBP3.78□□□□□ -1.8
LINC00540-203ENST00000631321 LCE3BQ5TA77 95 aa3.78□□□□□ -1.81
LINC00540-203ENST00000631321 KRTAP4-12Q9BQ66 201 aa3.77□□□□□ -1.81
LINC00540-203ENST00000631321 MT1AP04731 61 aa3.76□□□□□ -1.81
LINC00540-203ENST00000631321 MDN1Q9NU22 5596 aa3.75□□□□□ -1.81
LINC00540-203ENST00000631321 KRTAP5-9P26371 169 aa3.75□□□□□ -1.81
LINC00540-203ENST00000631321 KRTAP6-1Q3LI64 71 aa3.75□□□□□ -1.81
LINC00540-203ENST00000631321 LCE1AQ5T7P2 110 aa3.73□□□□□ -1.81
LINC00540-203ENST00000631321 KRTAP9-9Q9BYP9 154 aa3.71□□□□□ -1.82
LINC00540-203ENST00000631321 KRTAP9-4Q9BYQ2 154 aa3.71□□□□□ -1.82
LINC00540-203ENST00000631321 KRTAP5-5Q701N2 237 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-203ENST00000631321 SYNE2Q8WXH0 6885 aaKnown RBP3.7□□□□□ -1.82
LINC00540-203ENST00000631321 KRTAP4-9Q9BYQ8 210 aa3.68□□□□□ -1.82
LINC00540-203ENST00000631321 LCE4AQ5TA78 99 aa3.64□□□□□ -1.83
LINC00540-203ENST00000631321 SPRR2EP22531 72 aa3.61□□□□□ -1.83
LINC00540-203ENST00000631321 SPRR2BP35325 72 aa3.61□□□□□ -1.83
LINC00540-203ENST00000631321 SPRR2AP35326 72 aa3.61□□□□□ -1.83
LINC00540-203ENST00000631321 LCE3DQ9BYE3 92 aa3.6□□□□□ -1.83
LINC00540-203ENST00000631321 SYNE1Q8NF91 8797 aaKnown RBP3.58□□□□□ -1.84
LINC00540-203ENST00000631321 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
LINC00540-203ENST00000631321 KRTAP9-7A8MTY7 169 aa3.48□□□□□ -1.85
LINC00540-203ENST00000631321 LCE1DQ5T752 114 aa3.48□□□□□ -1.85
LINC00540-203ENST00000631321 SPRR2DP22532 72 aa3.45□□□□□ -1.86
LINC00540-203ENST00000631321 KRTAP6-3Q3LI67 103 aa3.41□□□□□ -1.86
LINC00540-203ENST00000631321 PRM1P04553 51 aa3.36□□□□□ -1.87
LINC00540-203ENST00000631321 MT3P25713 68 aa3.36□□□□□ -1.87
LINC00540-203ENST00000631321 KRTAP6-2Q3LI66 62 aa3.35□□□□□ -1.87
LINC00540-203ENST00000631321 KRTAP4-2Q9BYR5 136 aa3.33□□□□□ -1.88
LINC00540-203ENST00000631321 KRTAP4-11Q9BYQ6 195 aa3.28□□□□□ -1.88
LINC00540-203ENST00000631321 KRTAP5-4Q6L8H1 288 aa3.27□□□□□ -1.89
LINC00540-203ENST00000631321 NEBP20929 6669 aa3.27□□□□□ -1.89
LINC00540-203ENST00000631321 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
LINC00540-203ENST00000631321 KRTAP5-2Q701N4 177 aa3.07□□□□□ -1.92
LINC00540-203ENST00000631321 KRTAP20-2Q3LI61 65 aa3.03□□□□□ -1.92
LINC00540-203ENST00000631321 KRTAP20-1Q3LI63 56 aa3.03□□□□□ -1.92
LINC00540-203ENST00000631321 MT4P47944 62 aa3□□□□□ -1.93
LINC00540-203ENST00000631321 KRTAP2-2Q9BYT5 123 aa2.99□□□□□ -1.93
LINC00540-203ENST00000631321 KRTAP5-3Q6L8H2 238 aa2.98□□□□□ -1.93
LINC00540-203ENST00000631321 HMCN1Q96RW7 5635 aa2.94□□□□□ -1.94
LINC00540-203ENST00000631321 MUC5ACP98088 5654 aa2.84□□□□□ -1.96
LINC00540-203ENST00000631321 LCE1EQ5T753 118 aa2.78□□□□□ -1.96
LINC00540-203ENST00000631321 GPR98Q8WXG9 6306 aa2.77□□□□□ -1.97
LINC00540-203ENST00000631321 KRTAP5-1Q6L8H4 278 aa2.66□□□□□ -1.98
LINC00540-203ENST00000631321 KRTAP5-10Q6L8G5 202 aa2.65□□□□□ -1.99
LINC00540-203ENST00000631321 LCE1BQ5T7P3 118 aa2.64□□□□□ -1.99
LINC00540-203ENST00000631321 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
LINC00540-203ENST00000631321 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.5□□□□□ -2.01
LINC00540-203ENST00000631321 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
LINC00540-203ENST00000631321 KRTAP5-7Q6L8G8 165 aa2.42□□□□□ -2.02
LINC00540-203ENST00000631321 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
LINC00540-203ENST00000631321 AHNAK2Q8IVF2 5795 aa2.4□□□□□ -2.03
LINC00540-203ENST00000631321 KRTAP5-11Q6L8G4 156 aa2.27□□□□□ -2.05
LINC00540-203ENST00000631321 MUC5BQ9HC84 5762 aaPredicted RBP2.24□□□□□ -2.05
LINC00540-203ENST00000631321 LCE1FQ5T754 118 aa2.22□□□□□ -2.05
LINC00540-203ENST00000631321 AHNAKQ09666 5890 aaKnown RBP2.17□□□□□ -2.06
LINC00540-203ENST00000631321 KRTAP21-1Q3LI58 79 aa2.16□□□□□ -2.06
LINC00540-203ENST00000631321 KRTAP4-4Q9BYR3 166 aa2.15□□□□□ -2.07
LINC00540-203ENST00000631321 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
LINC00540-203ENST00000631321 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
LINC00540-203ENST00000631321 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 92 ms