RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 KRTAP19-7Q3SYF9 63 aa4.28□□□□□ -1.72
MSH6-215ENST00000622629 KRTAP9-6A0A140TA67 174 aa4.27□□□□□ -1.73
MSH6-215ENST00000622629 KMT2DO14686 5537 aa4.27□□□□□ -1.73
MSH6-215ENST00000622629 SPRR2EP22531 72 aa4.26□□□□□ -1.73
MSH6-215ENST00000622629 SPRR2BP35325 72 aa4.26□□□□□ -1.73
MSH6-215ENST00000622629 SPRR2AP35326 72 aa4.26□□□□□ -1.73
MSH6-215ENST00000622629 SSPOA2VEC9 5147 aa4.24□□□□□ -1.73
MSH6-215ENST00000622629 LCE3BQ5TA77 95 aa4.22□□□□□ -1.73
MSH6-215ENST00000622629 KRTAP4-3Q9BYR4 195 aa4.19□□□□□ -1.74
MSH6-215ENST00000622629 KRTAP19-3Q7Z4W3 81 aa4.19□□□□□ -1.74
MSH6-215ENST00000622629 KRTAP12-4P60329 112 aa4.18□□□□□ -1.74
MSH6-215ENST00000622629 LOC100996750A0A140TA64 210 aa4.17□□□□□ -1.74
MSH6-215ENST00000622629 FCGBPQ9Y6R7 5405 aaPredicted RBP4.17□□□□□ -1.74
MSH6-215ENST00000622629 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
MSH6-215ENST00000622629 SYNE2Q8WXH0 6885 aaKnown RBP4.16□□□□□ -1.74
MSH6-215ENST00000622629 KRTAP9-6A8MVA2 160 aa4.15□□□□□ -1.74
MSH6-215ENST00000622629 MACF1Q9UPN3 7388 aaKnown RBP4.12□□□□□ -1.75
MSH6-215ENST00000622629 MT1MQ8N339 61 aa4.1□□□□□ -1.75
MSH6-215ENST00000622629 SPRR2DP22532 72 aa4.09□□□□□ -1.75
MSH6-215ENST00000622629 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.02□□□□□ -1.77
MSH6-215ENST00000622629 MUC12Q9UKN1 5478 aa4.01□□□□□ -1.77
MSH6-215ENST00000622629 KRTAP2-3P0C7H8 128 aa4□□□□□ -1.77
MSH6-215ENST00000622629 KRTAP2-4Q9BYR9 128 aa4□□□□□ -1.77
MSH6-215ENST00000622629 KRTAP2-1Q9BYU5 128 aa4□□□□□ -1.77
MSH6-215ENST00000622629 KRTAP9-7A8MTY7 169 aa3.98□□□□□ -1.77
MSH6-215ENST00000622629 LCE3DQ9BYE3 92 aa3.94□□□□□ -1.78
MSH6-215ENST00000622629 LCE3EQ5T5B0 92 aa3.86□□□□□ -1.79
MSH6-215ENST00000622629 MUC19Q7Z5P9 8384 aa3.86□□□□□ -1.79
MSH6-215ENST00000622629 KRTAP6-3Q3LI67 103 aa3.86□□□□□ -1.79
MSH6-215ENST00000622629 KRTAP4-9Q9BYQ8 210 aa3.85□□□□□ -1.79
MSH6-215ENST00000622629 LCE1AQ5T7P2 110 aa3.81□□□□□ -1.8
MSH6-215ENST00000622629 LCE5AQ5TCM9 118 aa3.76□□□□□ -1.81
MSH6-215ENST00000622629 MT3P25713 68 aa3.74□□□□□ -1.81
MSH6-215ENST00000622629 MDN1Q9NU22 5596 aa3.71□□□□□ -1.81
MSH6-215ENST00000622629 MT1AP04731 61 aa3.71□□□□□ -1.82
MSH6-215ENST00000622629 MT4P47944 62 aa3.71□□□□□ -1.82
MSH6-215ENST00000622629 KRTAP6-1Q3LI64 71 aa3.69□□□□□ -1.82
MSH6-215ENST00000622629 PRM1P04553 51 aa3.65□□□□□ -1.82
MSH6-215ENST00000622629 KRTAP5-9P26371 169 aa3.64□□□□□ -1.83
MSH6-215ENST00000622629 KRTAP20-1Q3LI63 56 aa3.62□□□□□ -1.83
MSH6-215ENST00000622629 LCE1EQ5T753 118 aa3.6□□□□□ -1.83
MSH6-215ENST00000622629 NEBP20929 6669 aa3.52□□□□□ -1.85
MSH6-215ENST00000622629 KRTAP2-2Q9BYT5 123 aa3.48□□□□□ -1.85
MSH6-215ENST00000622629 KRTAP6-2Q3LI66 62 aa3.47□□□□□ -1.85
MSH6-215ENST00000622629 KRTAP9-4Q9BYQ2 154 aa3.44□□□□□ -1.86
MSH6-215ENST00000622629 LCE1FQ5T754 118 aa3.38□□□□□ -1.87
MSH6-215ENST00000622629 LCE1DQ5T752 114 aa3.34□□□□□ -1.88
MSH6-215ENST00000622629 LCE1BQ5T7P3 118 aa3.3□□□□□ -1.88
MSH6-215ENST00000622629 LCE4AQ5TA78 99 aa3.3□□□□□ -1.88
MSH6-215ENST00000622629 KRTAP4-6Q9BYQ5 205 aa3.26□□□□□ -1.89
MSH6-215ENST00000622629 KRTAP5-5Q701N2 237 aaPredicted RBP3.09□□□□□ -1.92
MSH6-215ENST00000622629 KRTAP20-2Q3LI61 65 aa3.08□□□□□ -1.92
MSH6-215ENST00000622629 HMCN1Q96RW7 5635 aa2.95□□□□□ -1.94
MSH6-215ENST00000622629 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
MSH6-215ENST00000622629 KRTAP5-4Q6L8H1 288 aa2.92□□□□□ -1.94
MSH6-215ENST00000622629 KRTAP4-11Q9BYQ6 195 aa2.79□□□□□ -1.96
MSH6-215ENST00000622629 MUC5ACP98088 5654 aa2.78□□□□□ -1.96
MSH6-215ENST00000622629 KRTAP5-3Q6L8H2 238 aa2.72□□□□□ -1.97
MSH6-215ENST00000622629 KRTAP9-9Q9BYP9 154 aa2.67□□□□□ -1.98
MSH6-215ENST00000622629 AHNAK2Q8IVF2 5795 aa2.61□□□□□ -1.99
MSH6-215ENST00000622629 KRTAP5-2Q701N4 177 aa2.59□□□□□ -1.99
MSH6-215ENST00000622629 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
MSH6-215ENST00000622629 LCE1CQ5T751 118 aa2.52□□□□□ -2.01
MSH6-215ENST00000622629 KRTAP4-12Q9BQ66 201 aa2.51□□□□□ -2.01
MSH6-215ENST00000622629 KRTAP4-2Q9BYR5 136 aa2.51□□□□□ -2.01
MSH6-215ENST00000622629 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
MSH6-215ENST00000622629 KRTAP5-10Q6L8G5 202 aa2.39□□□□□ -2.03
MSH6-215ENST00000622629 KRTAP5-1Q6L8H4 278 aa2.34□□□□□ -2.03
MSH6-215ENST00000622629 MUC5BQ9HC84 5762 aaPredicted RBP2.33□□□□□ -2.04
MSH6-215ENST00000622629 AHNAKQ09666 5890 aaKnown RBP2.14□□□□□ -2.07
MSH6-215ENST00000622629 KRTAP21-2Q3LI59 83 aa2.13□□□□□ -2.07
MSH6-215ENST00000622629 KRTAP5-7Q6L8G8 165 aa2.12□□□□□ -2.07
MSH6-215ENST00000622629 KRTAP5-11Q6L8G4 156 aa2.03□□□□□ -2.08
MSH6-215ENST00000622629 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.98□□□□□ -2.09
MSH6-215ENST00000622629 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.11
MSH6-215ENST00000622629 PHGR1C9JFL3 82 aa1.81□□□□□ -2.12
MSH6-215ENST00000622629 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 62.9 ms