RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 KRTAP9-2Q9BYQ4 174 aa7.29□□□□□ -1.24
LIME1-210ENST00000621325 MACF1Q9UPN3 7388 aaKnown RBP7.29□□□□□ -1.24
LIME1-210ENST00000621325 KRTAP19-4Q3LI73 84 aa7.28□□□□□ -1.24
LIME1-210ENST00000621325 KRTAP4-3Q9BYR4 195 aa7.16□□□□□ -1.26
LIME1-210ENST00000621325 KRTAP19-3Q7Z4W3 81 aa7.16□□□□□ -1.26
LIME1-210ENST00000621325 SPRR2FQ96RM1 72 aa7.14□□□□□ -1.27
LIME1-210ENST00000621325 MT1MQ8N339 61 aa7.1□□□□□ -1.27
LIME1-210ENST00000621325 MT1GP13640 62 aa7.09□□□□□ -1.27
LIME1-210ENST00000621325 CRCT1Q9UGL9 99 aa7.08□□□□□ -1.28
LIME1-210ENST00000621325 SYNE2Q8WXH0 6885 aaKnown RBP7.07□□□□□ -1.28
LIME1-210ENST00000621325 LOC100996750A0A140TA64 210 aa7.01□□□□□ -1.29
LIME1-210ENST00000621325 LCE5AQ5TCM9 118 aa6.98□□□□□ -1.29
LIME1-210ENST00000621325 DSTQ03001 7570 aaKnown RBP6.92□□□□□ -1.3
LIME1-210ENST00000621325 KRTAP2-3P0C7H8 128 aa6.89□□□□□ -1.31
LIME1-210ENST00000621325 KRTAP2-4Q9BYR9 128 aa6.89□□□□□ -1.31
LIME1-210ENST00000621325 KRTAP2-1Q9BYU5 128 aa6.89□□□□□ -1.31
LIME1-210ENST00000621325 MDN1Q9NU22 5596 aa6.85□□□□□ -1.31
LIME1-210ENST00000621325 KRTAP5-9P26371 169 aa6.8□□□□□ -1.32
LIME1-210ENST00000621325 LCE1AQ5T7P2 110 aa6.74□□□□□ -1.33
LIME1-210ENST00000621325 SPRR2EP22531 72 aa6.62□□□□□ -1.35
LIME1-210ENST00000621325 SPRR2BP35325 72 aa6.62□□□□□ -1.35
LIME1-210ENST00000621325 SPRR2AP35326 72 aa6.62□□□□□ -1.35
LIME1-210ENST00000621325 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.54□□□□□ -1.36
LIME1-210ENST00000621325 KRTAP9-6A0A140TA67 174 aa6.47□□□□□ -1.37
LIME1-210ENST00000621325 KRTAP6-3Q3LI67 103 aa6.45□□□□□ -1.38
LIME1-210ENST00000621325 KRTAP12-4P60329 112 aa6.4□□□□□ -1.38
LIME1-210ENST00000621325 KRTAP6-1Q3LI64 71 aa6.36□□□□□ -1.39
LIME1-210ENST00000621325 SPRR2DP22532 72 aa6.35□□□□□ -1.39
LIME1-210ENST00000621325 KRTAP5-5Q701N2 237 aaPredicted RBP6.34□□□□□ -1.4
LIME1-210ENST00000621325 LCE3BQ5TA77 95 aa6.32□□□□□ -1.4
LIME1-210ENST00000621325 MT1AP04731 61 aa6.3□□□□□ -1.4
LIME1-210ENST00000621325 SYNE1Q8NF91 8797 aaKnown RBP6.26□□□□□ -1.41
LIME1-210ENST00000621325 KRTAP4-9Q9BYQ8 210 aa6.14□□□□□ -1.43
LIME1-210ENST00000621325 NEBP20929 6669 aa6.1□□□□□ -1.43
LIME1-210ENST00000621325 KRTAP9-7A8MTY7 169 aa6.01□□□□□ -1.45
LIME1-210ENST00000621325 KRTAP9-4Q9BYQ2 154 aa5.96□□□□□ -1.45
LIME1-210ENST00000621325 KRTAP2-2Q9BYT5 123 aa5.83□□□□□ -1.48
LIME1-210ENST00000621325 PRM1P04553 51 aa5.83□□□□□ -1.48
LIME1-210ENST00000621325 LCE3DQ9BYE3 92 aa5.8□□□□□ -1.48
LIME1-210ENST00000621325 KRTAP5-4Q6L8H1 288 aa5.79□□□□□ -1.48
LIME1-210ENST00000621325 KRTAP6-2Q3LI66 62 aa5.78□□□□□ -1.48
LIME1-210ENST00000621325 LCE3EQ5T5B0 92 aa5.68□□□□□ -1.5
LIME1-210ENST00000621325 MT3P25713 68 aa5.67□□□□□ -1.5
LIME1-210ENST00000621325 KRTAP4-6Q9BYQ5 205 aa5.63□□□□□ -1.51
LIME1-210ENST00000621325 OBSCNQ5VST9 7968 aa5.62□□□□□ -1.51
LIME1-210ENST00000621325 MT4P47944 62 aa5.6□□□□□ -1.51
LIME1-210ENST00000621325 LCE4AQ5TA78 99 aa5.51□□□□□ -1.53
LIME1-210ENST00000621325 LCE1EQ5T753 118 aa5.48□□□□□ -1.53
LIME1-210ENST00000621325 KRTAP20-2Q3LI61 65 aa5.45□□□□□ -1.54
LIME1-210ENST00000621325 HMCN1Q96RW7 5635 aa5.41□□□□□ -1.54
LIME1-210ENST00000621325 LCE1DQ5T752 114 aa5.37□□□□□ -1.55
LIME1-210ENST00000621325 KRTAP5-2Q701N4 177 aa5.33□□□□□ -1.56
LIME1-210ENST00000621325 KRTAP20-1Q3LI63 56 aa5.33□□□□□ -1.56
LIME1-210ENST00000621325 KRTAP5-3Q6L8H2 238 aa5.22□□□□□ -1.57
LIME1-210ENST00000621325 MUC5ACP98088 5654 aa4.75□□□□□ -1.65
LIME1-210ENST00000621325 LCE1BQ5T7P3 118 aa4.66□□□□□ -1.66
LIME1-210ENST00000621325 LCE1FQ5T754 118 aa4.63□□□□□ -1.67
LIME1-210ENST00000621325 KRTAP4-11Q9BYQ6 195 aa4.61□□□□□ -1.67
LIME1-210ENST00000621325 KRTAP5-1Q6L8H4 278 aa4.6□□□□□ -1.67
LIME1-210ENST00000621325 KRTAP5-10Q6L8G5 202 aa4.54□□□□□ -1.68
LIME1-210ENST00000621325 KRTAP4-2Q9BYR5 136 aa4.54□□□□□ -1.68
LIME1-210ENST00000621325 AHNAK2Q8IVF2 5795 aa4.52□□□□□ -1.69
LIME1-210ENST00000621325 LCE1CQ5T751 118 aa4.47□□□□□ -1.69
LIME1-210ENST00000621325 KRTAP5-8O75690 187 aa4.44□□□□□ -1.7
LIME1-210ENST00000621325 KRTAP5-7Q6L8G8 165 aa4.28□□□□□ -1.72
LIME1-210ENST00000621325 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.2□□□□□ -1.74
LIME1-210ENST00000621325 KRTAP21-2Q3LI59 83 aa4.13□□□□□ -1.75
LIME1-210ENST00000621325 MUC19Q7Z5P9 8384 aa4.06□□□□□ -1.76
LIME1-210ENST00000621325 GPR98Q8WXG9 6306 aa3.96□□□□□ -1.78
LIME1-210ENST00000621325 MUC5BQ9HC84 5762 aaPredicted RBP3.94□□□□□ -1.78
LIME1-210ENST00000621325 KRTAP5-11Q6L8G4 156 aa3.9□□□□□ -1.79
LIME1-210ENST00000621325 KRTAP9-9Q9BYP9 154 aa3.83□□□□□ -1.8
LIME1-210ENST00000621325 KRTAP4-4Q9BYR3 166 aa3.79□□□□□ -1.8
LIME1-210ENST00000621325 KRTAP4-12Q9BQ66 201 aa3.78□□□□□ -1.8
LIME1-210ENST00000621325 KRTAP21-1Q3LI58 79 aa3.7□□□□□ -1.82
LIME1-210ENST00000621325 PHGR1C9JFL3 82 aa3.38□□□□□ -1.87
LIME1-210ENST00000621325 AHNAKQ09666 5890 aaKnown RBP3.21□□□□□ -1.9
LIME1-210ENST00000621325 MUC16Q8WXI7 14507 aa2.2□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 125.6 ms