RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 SSPOA2VEC9 5147 aa3.18□□□□□ -1.9
GGA3-222ENST00000621217 MUC12Q9UKN1 5478 aa3.18□□□□□ -1.9
GGA3-222ENST00000621217 SYNE2Q8WXH0 6885 aaKnown RBP3.16□□□□□ -1.9
GGA3-222ENST00000621217 KRTAP12-4P60329 112 aa3.13□□□□□ -1.91
GGA3-222ENST00000621217 MT1GP13640 62 aa3.12□□□□□ -1.91
GGA3-222ENST00000621217 MACF1Q9UPN3 7388 aaKnown RBP3.1□□□□□ -1.91
GGA3-222ENST00000621217 KRTAP19-6Q3LI70 58 aa3.09□□□□□ -1.91
GGA3-222ENST00000621217 KRTAP4-3Q9BYR4 195 aa3.09□□□□□ -1.91
GGA3-222ENST00000621217 MT1EP04732 61 aa3.07□□□□□ -1.92
GGA3-222ENST00000621217 SPRR2EP22531 72 aa3.07□□□□□ -1.92
GGA3-222ENST00000621217 SPRR2BP35325 72 aa3.07□□□□□ -1.92
GGA3-222ENST00000621217 SPRR2AP35326 72 aa3.07□□□□□ -1.92
GGA3-222ENST00000621217 KRTAP19-7Q3SYF9 63 aa3.07□□□□□ -1.92
GGA3-222ENST00000621217 MT1LQ93083 61 aa3.06□□□□□ -1.92
GGA3-222ENST00000621217 LOC100996750A0A140TA64 210 aa3.05□□□□□ -1.92
GGA3-222ENST00000621217 KRTAP9-6A8MVA2 160 aa3.02□□□□□ -1.93
GGA3-222ENST00000621217 KRTAP9-6A0A140TA67 174 aa3.02□□□□□ -1.93
GGA3-222ENST00000621217 KRTAP19-3Q7Z4W3 81 aa3□□□□□ -1.93
GGA3-222ENST00000621217 LCE3BQ5TA77 95 aa2.97□□□□□ -1.93
GGA3-222ENST00000621217 MT1MQ8N339 61 aa2.93□□□□□ -1.94
GGA3-222ENST00000621217 SPRR2DP22532 72 aa2.93□□□□□ -1.94
GGA3-222ENST00000621217 KRTAP2-3P0C7H8 128 aa2.89□□□□□ -1.95
GGA3-222ENST00000621217 KRTAP2-4Q9BYR9 128 aa2.89□□□□□ -1.95
GGA3-222ENST00000621217 KRTAP2-1Q9BYU5 128 aa2.89□□□□□ -1.95
GGA3-222ENST00000621217 MDN1Q9NU22 5596 aa2.88□□□□□ -1.95
GGA3-222ENST00000621217 LCE3DQ9BYE3 92 aa2.87□□□□□ -1.95
GGA3-222ENST00000621217 LCE3EQ5T5B0 92 aa2.87□□□□□ -1.95
GGA3-222ENST00000621217 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.83□□□□□ -1.96
GGA3-222ENST00000621217 KRTAP4-9Q9BYQ8 210 aa2.81□□□□□ -1.96
GGA3-222ENST00000621217 KRTAP9-7A8MTY7 169 aa2.8□□□□□ -1.96
GGA3-222ENST00000621217 PRM1P04553 51 aa2.75□□□□□ -1.97
GGA3-222ENST00000621217 KRTAP9-9Q9BYP9 154 aa2.75□□□□□ -1.97
GGA3-222ENST00000621217 KRTAP9-4Q9BYQ2 154 aa2.75□□□□□ -1.97
GGA3-222ENST00000621217 LCE1AQ5T7P2 110 aa2.74□□□□□ -1.97
GGA3-222ENST00000621217 LCE5AQ5TCM9 118 aa2.73□□□□□ -1.97
GGA3-222ENST00000621217 MT4P47944 62 aa2.73□□□□□ -1.97
GGA3-222ENST00000621217 LCE4AQ5TA78 99 aa2.71□□□□□ -1.98
GGA3-222ENST00000621217 KRTAP6-3Q3LI67 103 aa2.7□□□□□ -1.98
GGA3-222ENST00000621217 KRTAP6-1Q3LI64 71 aa2.65□□□□□ -1.99
GGA3-222ENST00000621217 MT1AP04731 61 aa2.58□□□□□ -2
GGA3-222ENST00000621217 KRTAP5-9P26371 169 aa2.57□□□□□ -2
GGA3-222ENST00000621217 KRTAP20-1Q3LI63 56 aa2.53□□□□□ -2
GGA3-222ENST00000621217 NEBP20929 6669 aa2.51□□□□□ -2.01
GGA3-222ENST00000621217 KRTAP6-2Q3LI66 62 aa2.51□□□□□ -2.01
GGA3-222ENST00000621217 LCE1EQ5T753 118 aa2.51□□□□□ -2.01
GGA3-222ENST00000621217 MT3P25713 68 aa2.51□□□□□ -2.01
GGA3-222ENST00000621217 LCE1FQ5T754 118 aa2.49□□□□□ -2.01
GGA3-222ENST00000621217 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
GGA3-222ENST00000621217 LCE1DQ5T752 114 aa2.44□□□□□ -2.02
GGA3-222ENST00000621217 KRTAP2-2Q9BYT5 123 aa2.42□□□□□ -2.02
GGA3-222ENST00000621217 LCE1BQ5T7P3 118 aa2.4□□□□□ -2.02
GGA3-222ENST00000621217 KRTAP4-6Q9BYQ5 205 aa2.4□□□□□ -2.03
GGA3-222ENST00000621217 KRTAP5-5Q701N2 237 aaPredicted RBP2.24□□□□□ -2.05
GGA3-222ENST00000621217 GPR98Q8WXG9 6306 aa2.23□□□□□ -2.05
GGA3-222ENST00000621217 KRTAP20-2Q3LI61 65 aa2.21□□□□□ -2.06
GGA3-222ENST00000621217 MUC5ACP98088 5654 aa2.21□□□□□ -2.06
GGA3-222ENST00000621217 HMCN1Q96RW7 5635 aa2.2□□□□□ -2.06
GGA3-222ENST00000621217 KRTAP4-12Q9BQ66 201 aa2.19□□□□□ -2.06
GGA3-222ENST00000621217 KRTAP5-4Q6L8H1 288 aa2.06□□□□□ -2.08
GGA3-222ENST00000621217 KRTAP4-11Q9BYQ6 195 aa2.02□□□□□ -2.09
GGA3-222ENST00000621217 AHNAK2Q8IVF2 5795 aa1.94□□□□□ -2.1
GGA3-222ENST00000621217 KRTAP5-3Q6L8H2 238 aa1.91□□□□□ -2.1
GGA3-222ENST00000621217 KRTAP4-2Q9BYR5 136 aa1.9□□□□□ -2.11
GGA3-222ENST00000621217 KRTAP4-4Q9BYR3 166 aa1.9□□□□□ -2.11
GGA3-222ENST00000621217 LCE1CQ5T751 118 aa1.86□□□□□ -2.11
GGA3-222ENST00000621217 MUC5BQ9HC84 5762 aaPredicted RBP1.84□□□□□ -2.11
GGA3-222ENST00000621217 KRTAP5-2Q701N4 177 aa1.84□□□□□ -2.12
GGA3-222ENST00000621217 KRTAP5-8O75690 187 aa1.77□□□□□ -2.13
GGA3-222ENST00000621217 KRTAP5-10Q6L8G5 202 aa1.7□□□□□ -2.14
GGA3-222ENST00000621217 KRTAP5-1Q6L8H4 278 aa1.68□□□□□ -2.14
GGA3-222ENST00000621217 AHNAKQ09666 5890 aaKnown RBP1.61□□□□□ -2.15
GGA3-222ENST00000621217 KRTAP21-2Q3LI59 83 aa1.54□□□□□ -2.16
GGA3-222ENST00000621217 KRTAP5-7Q6L8G8 165 aa1.54□□□□□ -2.16
GGA3-222ENST00000621217 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.51□□□□□ -2.17
GGA3-222ENST00000621217 KRTAP5-11Q6L8G4 156 aa1.44□□□□□ -2.18
GGA3-222ENST00000621217 KRTAP21-1Q3LI58 79 aa1.4□□□□□ -2.19
GGA3-222ENST00000621217 PHGR1C9JFL3 82 aa1.26□□□□□ -2.21
GGA3-222ENST00000621217 MUC16Q8WXI7 14507 aa0.87□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 80.9 ms