RNA–Protein interactions for RNA: ENST00000616973.4

NR1H3-235, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1H3, Length 1,919 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-235ENST00000616973 KRTAP9-6A8MVA2 160 aa5.4□□□□□ -1.55
NR1H3-235ENST00000616973 MACF1Q9UPN3 7388 aaKnown RBP5.36□□□□□ -1.55
NR1H3-235ENST00000616973 KRTAP19-3Q7Z4W3 81 aa5.31□□□□□ -1.56
NR1H3-235ENST00000616973 MT1GP13640 62 aa5.29□□□□□ -1.56
NR1H3-235ENST00000616973 SYNE2Q8WXH0 6885 aaKnown RBP5.26□□□□□ -1.57
NR1H3-235ENST00000616973 MT1MQ8N339 61 aa5.25□□□□□ -1.57
NR1H3-235ENST00000616973 KRTAP9-6A0A140TA67 174 aa5.23□□□□□ -1.57
NR1H3-235ENST00000616973 MUC12Q9UKN1 5478 aa5.21□□□□□ -1.57
NR1H3-235ENST00000616973 SPRR2FQ96RM1 72 aa5.21□□□□□ -1.58
NR1H3-235ENST00000616973 KRTAP2-3P0C7H8 128 aa5.17□□□□□ -1.58
NR1H3-235ENST00000616973 LCE5AQ5TCM9 118 aa5.17□□□□□ -1.58
NR1H3-235ENST00000616973 KRTAP4-3Q9BYR4 195 aa5.17□□□□□ -1.58
NR1H3-235ENST00000616973 KRTAP2-4Q9BYR9 128 aa5.17□□□□□ -1.58
NR1H3-235ENST00000616973 KRTAP2-1Q9BYU5 128 aa5.17□□□□□ -1.58
NR1H3-235ENST00000616973 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.08□□□□□ -1.6
NR1H3-235ENST00000616973 LOC100996750A0A140TA64 210 aa5.07□□□□□ -1.6
NR1H3-235ENST00000616973 KRTAP5-9P26371 169 aa5.06□□□□□ -1.6
NR1H3-235ENST00000616973 MDN1Q9NU22 5596 aa5.04□□□□□ -1.6
NR1H3-235ENST00000616973 LCE1AQ5T7P2 110 aa4.95□□□□□ -1.62
NR1H3-235ENST00000616973 KRTAP6-3Q3LI67 103 aa4.9□□□□□ -1.62
NR1H3-235ENST00000616973 SPRR2EP22531 72 aa4.84□□□□□ -1.63
NR1H3-235ENST00000616973 SPRR2BP35325 72 aa4.84□□□□□ -1.63
NR1H3-235ENST00000616973 SPRR2AP35326 72 aa4.84□□□□□ -1.63
NR1H3-235ENST00000616973 DSTQ03001 7570 aaKnown RBP4.82□□□□□ -1.64
NR1H3-235ENST00000616973 KRTAP9-7A8MTY7 169 aa4.8□□□□□ -1.64
NR1H3-235ENST00000616973 MT1AP04731 61 aa4.71□□□□□ -1.66
NR1H3-235ENST00000616973 KRTAP5-5Q701N2 237 aaPredicted RBP4.71□□□□□ -1.66
NR1H3-235ENST00000616973 KRTAP6-1Q3LI64 71 aa4.67□□□□□ -1.66
NR1H3-235ENST00000616973 SPRR2DP22532 72 aa4.66□□□□□ -1.66
NR1H3-235ENST00000616973 NEBP20929 6669 aa4.65□□□□□ -1.66
NR1H3-235ENST00000616973 LCE3BQ5TA77 95 aa4.6□□□□□ -1.67
NR1H3-235ENST00000616973 KRTAP9-4Q9BYQ2 154 aa4.44□□□□□ -1.7
NR1H3-235ENST00000616973 KRTAP12-4P60329 112 aa4.43□□□□□ -1.7
NR1H3-235ENST00000616973 KRTAP4-9Q9BYQ8 210 aa4.41□□□□□ -1.7
NR1H3-235ENST00000616973 KRTAP5-4Q6L8H1 288 aa4.33□□□□□ -1.72
NR1H3-235ENST00000616973 LCE3DQ9BYE3 92 aa4.33□□□□□ -1.72
NR1H3-235ENST00000616973 SYNE1Q8NF91 8797 aaKnown RBP4.31□□□□□ -1.72
NR1H3-235ENST00000616973 LCE3EQ5T5B0 92 aa4.25□□□□□ -1.73
NR1H3-235ENST00000616973 MT3P25713 68 aa4.24□□□□□ -1.73
NR1H3-235ENST00000616973 KRTAP20-1Q3LI63 56 aa4.23□□□□□ -1.73
NR1H3-235ENST00000616973 KRTAP6-2Q3LI66 62 aa4.23□□□□□ -1.73
NR1H3-235ENST00000616973 KRTAP2-2Q9BYT5 123 aa4.2□□□□□ -1.74
NR1H3-235ENST00000616973 LCE4AQ5TA78 99 aa4.15□□□□□ -1.75
NR1H3-235ENST00000616973 MT4P47944 62 aa4.07□□□□□ -1.76
NR1H3-235ENST00000616973 KRTAP4-6Q9BYQ5 205 aa4.06□□□□□ -1.76
NR1H3-235ENST00000616973 KRTAP20-2Q3LI61 65 aa4.01□□□□□ -1.77
NR1H3-235ENST00000616973 HMCN1Q96RW7 5635 aa4.01□□□□□ -1.77
NR1H3-235ENST00000616973 LCE1DQ5T752 114 aa3.99□□□□□ -1.77
NR1H3-235ENST00000616973 KRTAP5-2Q701N4 177 aa3.99□□□□□ -1.77
NR1H3-235ENST00000616973 PRM1P04553 51 aa3.87□□□□□ -1.79
NR1H3-235ENST00000616973 KRTAP5-3Q6L8H2 238 aa3.86□□□□□ -1.79
NR1H3-235ENST00000616973 OBSCNQ5VST9 7968 aa3.83□□□□□ -1.8
NR1H3-235ENST00000616973 LCE1EQ5T753 118 aa3.6□□□□□ -1.83
NR1H3-235ENST00000616973 AHNAK2Q8IVF2 5795 aa3.53□□□□□ -1.84
NR1H3-235ENST00000616973 KRTAP5-10Q6L8G5 202 aa3.4□□□□□ -1.86
NR1H3-235ENST00000616973 KRTAP4-11Q9BYQ6 195 aa3.4□□□□□ -1.86
NR1H3-235ENST00000616973 MUC5ACP98088 5654 aa3.4□□□□□ -1.87
NR1H3-235ENST00000616973 KRTAP5-1Q6L8H4 278 aa3.39□□□□□ -1.87
NR1H3-235ENST00000616973 LCE1BQ5T7P3 118 aa3.36□□□□□ -1.87
NR1H3-235ENST00000616973 LCE1CQ5T751 118 aa3.36□□□□□ -1.87
NR1H3-235ENST00000616973 KRTAP4-2Q9BYR5 136 aa3.35□□□□□ -1.87
NR1H3-235ENST00000616973 KRTAP5-8O75690 187 aa3.29□□□□□ -1.88
NR1H3-235ENST00000616973 KRTAP5-7Q6L8G8 165 aa3.25□□□□□ -1.89
NR1H3-235ENST00000616973 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.19□□□□□ -1.9
NR1H3-235ENST00000616973 GPR98Q8WXG9 6306 aa3.15□□□□□ -1.91
NR1H3-235ENST00000616973 KRTAP9-9Q9BYP9 154 aa3.13□□□□□ -1.91
NR1H3-235ENST00000616973 LCE1FQ5T754 118 aa3.09□□□□□ -1.92
NR1H3-235ENST00000616973 KRTAP21-2Q3LI59 83 aa3.05□□□□□ -1.92
NR1H3-235ENST00000616973 MUC5BQ9HC84 5762 aaPredicted RBP2.95□□□□□ -1.94
NR1H3-235ENST00000616973 KRTAP5-11Q6L8G4 156 aa2.93□□□□□ -1.94
NR1H3-235ENST00000616973 KRTAP4-12Q9BQ66 201 aa2.71□□□□□ -1.98
NR1H3-235ENST00000616973 KRTAP4-4Q9BYR3 166 aa2.67□□□□□ -1.98
NR1H3-235ENST00000616973 AHNAKQ09666 5890 aaKnown RBP2.61□□□□□ -1.99
NR1H3-235ENST00000616973 PHGR1C9JFL3 82 aa2.52□□□□□ -2.01
NR1H3-235ENST00000616973 KRTAP21-1Q3LI58 79 aa2.51□□□□□ -2.01
NR1H3-235ENST00000616973 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
NR1H3-235ENST00000616973 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 2159.9 ms