RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 MT1LQ93083 61 aa3□□□□□ -1.93
PDLIM5-222ENST00000615540 MT1EP04732 61 aa3□□□□□ -1.93
PDLIM5-222ENST00000615540 KRTAP9-2Q9BYQ4 174 aa2.95□□□□□ -1.94
PDLIM5-222ENST00000615540 SPRR2DP22532 72 aa2.95□□□□□ -1.94
PDLIM5-222ENST00000615540 LCE2DQ5TA82 110 aaPredicted RBP2.93□□□□□ -1.94
PDLIM5-222ENST00000615540 KRTAP19-3Q7Z4W3 81 aa2.93□□□□□ -1.94
PDLIM5-222ENST00000615540 KRTAP19-6Q3LI70 58 aa2.92□□□□□ -1.94
PDLIM5-222ENST00000615540 KRTAP19-4Q3LI73 84 aa2.89□□□□□ -1.95
PDLIM5-222ENST00000615540 KRTAP19-7Q3SYF9 63 aa2.88□□□□□ -1.95
PDLIM5-222ENST00000615540 MT1MQ8N339 61 aa2.87□□□□□ -1.95
PDLIM5-222ENST00000615540 KRTAP4-9Q9BYQ8 210 aa2.86□□□□□ -1.95
PDLIM5-222ENST00000615540 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
PDLIM5-222ENST00000615540 MT4P47944 62 aa2.82□□□□□ -1.96
PDLIM5-222ENST00000615540 MACF1Q9UPN3 7388 aaKnown RBP2.77□□□□□ -1.97
PDLIM5-222ENST00000615540 KRTAP9-6A8MVA2 160 aa2.77□□□□□ -1.97
PDLIM5-222ENST00000615540 LCE3DQ9BYE3 92 aa2.72□□□□□ -1.97
PDLIM5-222ENST00000615540 DSTQ03001 7570 aaKnown RBP2.69□□□□□ -1.98
PDLIM5-222ENST00000615540 MUC12Q9UKN1 5478 aa2.66□□□□□ -1.98
PDLIM5-222ENST00000615540 KRTAP2-3P0C7H8 128 aa2.66□□□□□ -1.98
PDLIM5-222ENST00000615540 KRTAP2-4Q9BYR9 128 aa2.66□□□□□ -1.98
PDLIM5-222ENST00000615540 KRTAP2-1Q9BYU5 128 aa2.66□□□□□ -1.98
PDLIM5-222ENST00000615540 FCGBPQ9Y6R7 5405 aaPredicted RBP2.66□□□□□ -1.98
PDLIM5-222ENST00000615540 LCE3EQ5T5B0 92 aa2.65□□□□□ -1.98
PDLIM5-222ENST00000615540 SSPOA2VEC9 5147 aa2.65□□□□□ -1.99
PDLIM5-222ENST00000615540 KRTAP9-6A0A140TA67 174 aa2.63□□□□□ -1.99
PDLIM5-222ENST00000615540 KRTAP6-1Q3LI64 71 aa2.59□□□□□ -1.99
PDLIM5-222ENST00000615540 LCE5AQ5TCM9 118 aa2.58□□□□□ -2
PDLIM5-222ENST00000615540 PRM1P04553 51 aa2.57□□□□□ -2
PDLIM5-222ENST00000615540 MT1AP04731 61 aa2.56□□□□□ -2
PDLIM5-222ENST00000615540 LCE1AQ5T7P2 110 aa2.53□□□□□ -2
PDLIM5-222ENST00000615540 MT3P25713 68 aa2.52□□□□□ -2.01
PDLIM5-222ENST00000615540 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.51□□□□□ -2.01
PDLIM5-222ENST00000615540 KRTAP9-7A8MTY7 169 aa2.48□□□□□ -2.01
PDLIM5-222ENST00000615540 KRTAP6-2Q3LI66 62 aa2.47□□□□□ -2.01
PDLIM5-222ENST00000615540 LCE1BQ5T7P3 118 aa2.47□□□□□ -2.01
PDLIM5-222ENST00000615540 LCE1DQ5T752 114 aa2.46□□□□□ -2.01
PDLIM5-222ENST00000615540 KRTAP20-1Q3LI63 56 aa2.46□□□□□ -2.02
PDLIM5-222ENST00000615540 KRTAP6-3Q3LI67 103 aa2.45□□□□□ -2.02
PDLIM5-222ENST00000615540 KRTAP9-4Q9BYQ2 154 aa2.44□□□□□ -2.02
PDLIM5-222ENST00000615540 GPR98Q8WXG9 6306 aa2.36□□□□□ -2.03
PDLIM5-222ENST00000615540 OBSCNQ5VST9 7968 aa2.34□□□□□ -2.03
PDLIM5-222ENST00000615540 SYNE1Q8NF91 8797 aaKnown RBP2.34□□□□□ -2.04
PDLIM5-222ENST00000615540 KRTAP4-6Q9BYQ5 205 aa2.32□□□□□ -2.04
PDLIM5-222ENST00000615540 MDN1Q9NU22 5596 aa2.31□□□□□ -2.04
PDLIM5-222ENST00000615540 KRTAP5-9P26371 169 aa2.3□□□□□ -2.04
PDLIM5-222ENST00000615540 LCE4AQ5TA78 99 aa2.24□□□□□ -2.05
PDLIM5-222ENST00000615540 NEBP20929 6669 aa2.24□□□□□ -2.05
PDLIM5-222ENST00000615540 KRTAP2-2Q9BYT5 123 aa2.21□□□□□ -2.06
PDLIM5-222ENST00000615540 KRTAP5-5Q701N2 237 aaPredicted RBP2.11□□□□□ -2.07
PDLIM5-222ENST00000615540 KRTAP20-2Q3LI61 65 aa2.09□□□□□ -2.07
PDLIM5-222ENST00000615540 KRTAP4-4Q9BYR3 166 aa2.07□□□□□ -2.08
PDLIM5-222ENST00000615540 KRTAP4-12Q9BQ66 201 aa2.04□□□□□ -2.08
PDLIM5-222ENST00000615540 KRTAP4-2Q9BYR5 136 aa2.04□□□□□ -2.08
PDLIM5-222ENST00000615540 LCE1CQ5T751 118 aa1.98□□□□□ -2.09
PDLIM5-222ENST00000615540 LCE1EQ5T753 118 aa1.98□□□□□ -2.09
PDLIM5-222ENST00000615540 LCE1FQ5T754 118 aa1.98□□□□□ -2.09
PDLIM5-222ENST00000615540 KRTAP4-11Q9BYQ6 195 aa1.98□□□□□ -2.09
PDLIM5-222ENST00000615540 KRTAP5-4Q6L8H1 288 aa1.96□□□□□ -2.1
PDLIM5-222ENST00000615540 KRTAP9-9Q9BYP9 154 aa1.93□□□□□ -2.1
PDLIM5-222ENST00000615540 AHNAK2Q8IVF2 5795 aa1.84□□□□□ -2.11
PDLIM5-222ENST00000615540 HMCN1Q96RW7 5635 aa1.76□□□□□ -2.13
PDLIM5-222ENST00000615540 MUC5ACP98088 5654 aa1.71□□□□□ -2.14
PDLIM5-222ENST00000615540 KRTAP5-3Q6L8H2 238 aa1.7□□□□□ -2.14
PDLIM5-222ENST00000615540 KRTAP5-2Q701N4 177 aa1.69□□□□□ -2.14
PDLIM5-222ENST00000615540 AHNAKQ09666 5890 aaKnown RBP1.62□□□□□ -2.15
PDLIM5-222ENST00000615540 KRTAP5-8O75690 187 aa1.62□□□□□ -2.15
PDLIM5-222ENST00000615540 KRTAP5-10Q6L8G5 202 aa1.58□□□□□ -2.16
PDLIM5-222ENST00000615540 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.53□□□□□ -2.16
PDLIM5-222ENST00000615540 MUC19Q7Z5P9 8384 aa1.51□□□□□ -2.17
PDLIM5-222ENST00000615540 KRTAP5-1Q6L8H4 278 aa1.51□□□□□ -2.17
PDLIM5-222ENST00000615540 MUC5BQ9HC84 5762 aaPredicted RBP1.46□□□□□ -2.18
PDLIM5-222ENST00000615540 KRTAP21-2Q3LI59 83 aa1.43□□□□□ -2.18
PDLIM5-222ENST00000615540 KRTAP5-11Q6L8G4 156 aa1.34□□□□□ -2.19
PDLIM5-222ENST00000615540 KRTAP5-7Q6L8G8 165 aa1.34□□□□□ -2.2
PDLIM5-222ENST00000615540 PHGR1C9JFL3 82 aa1.32□□□□□ -2.2
PDLIM5-222ENST00000615540 KRTAP21-1Q3LI58 79 aa1.21□□□□□ -2.22
PDLIM5-222ENST00000615540 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 88.4 ms