RNA–Protein interactions for RNA: ENST00000612130.4

UBE2F-223, Transcript of ubiquitin conjugating enzyme E2 F (putative), human

APPRIS P1 TSL 5 BASIC

Gene UBE2F, Length 2,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2F-223	ENST00000612130	MT1L	Q93083	61 aa		4.69	□□□□□ -1.66
UBE2F-223	ENST00000612130	KMT2D	O14686	5537 aa		4.68	□□□□□ -1.66
UBE2F-223	ENST00000612130	MT1E	P04732	61 aa		4.64	□□□□□ -1.67
UBE2F-223	ENST00000612130	USH2A	O75445	5202 aa		4.62	□□□□□ -1.67
UBE2F-223	ENST00000612130	SSPO	A2VEC9	5147 aa		4.52	□□□□□ -1.69
UBE2F-223	ENST00000612130	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.52	□□□□□ -1.69
UBE2F-223	ENST00000612130	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.43	□□□□□ -1.7
UBE2F-223	ENST00000612130	LCE3B	Q5TA77	95 aa		4.39	□□□□□ -1.71
UBE2F-223	ENST00000612130	KRTAP9-7	A8MTY7	169 aa		4.38	□□□□□ -1.71
UBE2F-223	ENST00000612130	MT1G	P13640	62 aa		4.34	□□□□□ -1.71
UBE2F-223	ENST00000612130	KRTAP19-6	Q3LI70	58 aa		4.34	□□□□□ -1.71
UBE2F-223	ENST00000612130	KRTAP4-3	Q9BYR4	195 aa		4.34	□□□□□ -1.71
UBE2F-223	ENST00000612130	MT1M	Q8N339	61 aa		4.32	□□□□□ -1.72
UBE2F-223	ENST00000612130	KRTAP12-4	P60329	112 aa		4.31	□□□□□ -1.72
UBE2F-223	ENST00000612130	KRTAP19-3	Q7Z4W3	81 aa		4.3	□□□□□ -1.72
UBE2F-223	ENST00000612130	MACF1	Q9UPN3	7388 aa	Known RBP	4.28	□□□□□ -1.72
UBE2F-223	ENST00000612130	KRTAP9-9	Q9BYP9	154 aa		4.27	□□□□□ -1.73
UBE2F-223	ENST00000612130	KRTAP9-4	Q9BYQ2	154 aa		4.27	□□□□□ -1.73
UBE2F-223	ENST00000612130	SYNE2	Q8WXH0	6885 aa	Known RBP	4.26	□□□□□ -1.73
UBE2F-223	ENST00000612130	KRTAP5-3	Q6L8H2	238 aa		4.23	□□□□□ -1.73
UBE2F-223	ENST00000612130	LCE5A	Q5TCM9	118 aa		4.11	□□□□□ -1.75
UBE2F-223	ENST00000612130	KRTAP4-2	Q9BYR5	136 aa		4.11	□□□□□ -1.75
UBE2F-223	ENST00000612130	KRTAP4-12	Q9BQ66	201 aa		4.1	□□□□□ -1.75
UBE2F-223	ENST00000612130	MT1A	P04731	61 aa		4.1	□□□□□ -1.75
UBE2F-223	ENST00000612130	KRTAP6-3	Q3LI67	103 aa		4.1	□□□□□ -1.75
UBE2F-223	ENST00000612130	LCE1D	Q5T752	114 aa		4.1	□□□□□ -1.75
UBE2F-223	ENST00000612130	KRTAP4-9	Q9BYQ8	210 aa		4.06	□□□□□ -1.76
UBE2F-223	ENST00000612130	MUC12	Q9UKN1	5478 aa		4.05	□□□□□ -1.76
UBE2F-223	ENST00000612130	NEB	P20929	6669 aa		3.97	□□□□□ -1.77
UBE2F-223	ENST00000612130	SPRR2F	Q96RM1	72 aa		3.97	□□□□□ -1.77
UBE2F-223	ENST00000612130	LCE3D	Q9BYE3	92 aa		3.95	□□□□□ -1.78
UBE2F-223	ENST00000612130	KRTAP6-1	Q3LI64	71 aa		3.95	□□□□□ -1.78
UBE2F-223	ENST00000612130	LCE3E	Q5T5B0	92 aa		3.94	□□□□□ -1.78
UBE2F-223	ENST00000612130	KRTAP5-9	P26371	169 aa		3.91	□□□□□ -1.78
UBE2F-223	ENST00000612130	MDN1	Q9NU22	5596 aa		3.89	□□□□□ -1.79
UBE2F-223	ENST00000612130	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.88	□□□□□ -1.79
UBE2F-223	ENST00000612130	PRM1	P04553	51 aa		3.85	□□□□□ -1.79
UBE2F-223	ENST00000612130	DST	Q03001	7570 aa	Known RBP	3.84	□□□□□ -1.79
UBE2F-223	ENST00000612130	SYNE1	Q8NF91	8797 aa	Known RBP	3.83	□□□□□ -1.8
UBE2F-223	ENST00000612130	KRTAP20-1	Q3LI63	56 aa		3.81	□□□□□ -1.8
UBE2F-223	ENST00000612130	KRTAP4-11	Q9BYQ6	195 aa		3.78	□□□□□ -1.8
UBE2F-223	ENST00000612130	SPRR2E	P22531	72 aa		3.75	□□□□□ -1.81
UBE2F-223	ENST00000612130	SPRR2B	P35325	72 aa		3.75	□□□□□ -1.81
UBE2F-223	ENST00000612130	SPRR2A	P35326	72 aa		3.75	□□□□□ -1.81
UBE2F-223	ENST00000612130	LCE1A	Q5T7P2	110 aa		3.71	□□□□□ -1.81
UBE2F-223	ENST00000612130	KRTAP6-2	Q3LI66	62 aa		3.67	□□□□□ -1.82
UBE2F-223	ENST00000612130	SPRR2D	P22532	72 aa		3.62	□□□□□ -1.83
UBE2F-223	ENST00000612130	KRTAP2-2	Q9BYT5	123 aa		3.61	□□□□□ -1.83
UBE2F-223	ENST00000612130	GPR98	Q8WXG9	6306 aa		3.56	□□□□□ -1.84
UBE2F-223	ENST00000612130	MT3	P25713	68 aa		3.52	□□□□□ -1.85
UBE2F-223	ENST00000612130	LCE4A	Q5TA78	99 aa		3.41	□□□□□ -1.86
UBE2F-223	ENST00000612130	HMCN1	Q96RW7	5635 aa		3.35	□□□□□ -1.87
UBE2F-223	ENST00000612130	KRTAP5-4	Q6L8H1	288 aa		3.22	□□□□□ -1.89
UBE2F-223	ENST00000612130	OBSCN	Q5VST9	7968 aa		3.22	□□□□□ -1.89
UBE2F-223	ENST00000612130	MT4	P47944	62 aa		3.19	□□□□□ -1.9
UBE2F-223	ENST00000612130	LCE1E	Q5T753	118 aa		3.11	□□□□□ -1.91
UBE2F-223	ENST00000612130	AHNAK2	Q8IVF2	5795 aa		3.08	□□□□□ -1.92
UBE2F-223	ENST00000612130	LCE1F	Q5T754	118 aa		3.08	□□□□□ -1.92
UBE2F-223	ENST00000612130	KRTAP5-2	Q701N4	177 aa		3.07	□□□□□ -1.92
UBE2F-223	ENST00000612130	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.01	□□□□□ -1.93
UBE2F-223	ENST00000612130	KRTAP20-2	Q3LI61	65 aa		3.01	□□□□□ -1.93
UBE2F-223	ENST00000612130	KRTAP5-10	Q6L8G5	202 aa		3	□□□□□ -1.93
UBE2F-223	ENST00000612130	KRTAP5-7	Q6L8G8	165 aa		2.95	□□□□□ -1.94
UBE2F-223	ENST00000612130	MUC5AC	P98088	5654 aa		2.94	□□□□□ -1.94
UBE2F-223	ENST00000612130	KRTAP5-1	Q6L8H4	278 aa		2.83	□□□□□ -1.96
UBE2F-223	ENST00000612130	AHNAK	Q09666	5890 aa	Known RBP	2.78	□□□□□ -1.96
UBE2F-223	ENST00000612130	LCE1B	Q5T7P3	118 aa		2.75	□□□□□ -1.97
UBE2F-223	ENST00000612130	LCE1C	Q5T751	118 aa		2.68	□□□□□ -1.98
UBE2F-223	ENST00000612130	KRTAP5-8	O75690	187 aa		2.62	□□□□□ -1.99
UBE2F-223	ENST00000612130	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.62	□□□□□ -1.99
UBE2F-223	ENST00000612130	KRTAP21-2	Q3LI59	83 aa		2.55	□□□□□ -2
UBE2F-223	ENST00000612130	KRTAP21-1	Q3LI58	79 aa		2.48	□□□□□ -2.01
UBE2F-223	ENST00000612130	KRTAP5-11	Q6L8G4	156 aa		2.48	□□□□□ -2.01
UBE2F-223	ENST00000612130	KRTAP4-4	Q9BYR3	166 aa		2.45	□□□□□ -2.02
UBE2F-223	ENST00000612130	MUC19	Q7Z5P9	8384 aa		2.13	□□□□□ -2.07
UBE2F-223	ENST00000612130	PHGR1	C9JFL3	82 aa		1.96	□□□□□ -2.1
UBE2F-223	ENST00000612130	MUC16	Q8WXI7	14507 aa		1.31	□□□□□ -2.2

Retrieved 77 of 20,778 RNA–protein pairs in 114.9 ms