RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 KRTAP9-9Q9BYP9 154 aa4.84□□□□□ -1.64
NEK3-205ENST00000610828 KRTAP9-4Q9BYQ2 154 aa4.84□□□□□ -1.64
NEK3-205ENST00000610828 MT1EP04732 61 aa4.83□□□□□ -1.64
NEK3-205ENST00000610828 FCGBPQ9Y6R7 5405 aaPredicted RBP4.82□□□□□ -1.64
NEK3-205ENST00000610828 MT1LQ93083 61 aa4.78□□□□□ -1.64
NEK3-205ENST00000610828 KRTAP4-7Q9BYR0 210 aa4.77□□□□□ -1.65
NEK3-205ENST00000610828 KRTAP19-4Q3LI73 84 aa4.72□□□□□ -1.65
NEK3-205ENST00000610828 KRTAP9-6A8MVA2 160 aa4.71□□□□□ -1.66
NEK3-205ENST00000610828 MUC12Q9UKN1 5478 aa4.68□□□□□ -1.66
NEK3-205ENST00000610828 LCE1DQ5T752 114 aa4.62□□□□□ -1.67
NEK3-205ENST00000610828 LCE4AQ5TA78 99 aa4.57□□□□□ -1.68
NEK3-205ENST00000610828 KRTAP19-3Q7Z4W3 81 aa4.57□□□□□ -1.68
NEK3-205ENST00000610828 MACF1Q9UPN3 7388 aaKnown RBP4.57□□□□□ -1.68
NEK3-205ENST00000610828 SPRR2FQ96RM1 72 aa4.55□□□□□ -1.68
NEK3-205ENST00000610828 MT1GP13640 62 aa4.54□□□□□ -1.68
NEK3-205ENST00000610828 KRTAP4-3Q9BYR4 195 aa4.54□□□□□ -1.68
NEK3-205ENST00000610828 MT1MQ8N339 61 aa4.53□□□□□ -1.68
NEK3-205ENST00000610828 KRTAP9-7A8MTY7 169 aa4.5□□□□□ -1.69
NEK3-205ENST00000610828 KRTAP4-9Q9BYQ8 210 aa4.49□□□□□ -1.69
NEK3-205ENST00000610828 CRCT1Q9UGL9 99 aa4.45□□□□□ -1.7
NEK3-205ENST00000610828 LCE5AQ5TCM9 118 aa4.45□□□□□ -1.7
NEK3-205ENST00000610828 KRTAP2-3P0C7H8 128 aa4.44□□□□□ -1.7
NEK3-205ENST00000610828 KRTAP2-4Q9BYR9 128 aa4.44□□□□□ -1.7
NEK3-205ENST00000610828 KRTAP2-1Q9BYU5 128 aa4.44□□□□□ -1.7
NEK3-205ENST00000610828 SYNE2Q8WXH0 6885 aaKnown RBP4.42□□□□□ -1.7
NEK3-205ENST00000610828 DSTQ03001 7570 aaKnown RBP4.41□□□□□ -1.7
NEK3-205ENST00000610828 MDN1Q9NU22 5596 aa4.39□□□□□ -1.71
NEK3-205ENST00000610828 KRTAP4-2Q9BYR5 136 aa4.37□□□□□ -1.71
NEK3-205ENST00000610828 KRTAP4-11Q9BYQ6 195 aa4.34□□□□□ -1.72
NEK3-205ENST00000610828 KRTAP5-9P26371 169 aa4.31□□□□□ -1.72
NEK3-205ENST00000610828 LCE1AQ5T7P2 110 aa4.26□□□□□ -1.73
NEK3-205ENST00000610828 SPRR2EP22531 72 aa4.2□□□□□ -1.74
NEK3-205ENST00000610828 SPRR2BP35325 72 aa4.2□□□□□ -1.74
NEK3-205ENST00000610828 SPRR2AP35326 72 aa4.2□□□□□ -1.74
NEK3-205ENST00000610828 KRTAP6-1Q3LI64 71 aa4.06□□□□□ -1.76
NEK3-205ENST00000610828 KRTAP6-3Q3LI67 103 aa4.06□□□□□ -1.76
NEK3-205ENST00000610828 MT1AP04731 61 aa4.03□□□□□ -1.76
NEK3-205ENST00000610828 SPRR2DP22532 72 aa4.03□□□□□ -1.76
NEK3-205ENST00000610828 KRTAP5-5Q701N2 237 aaPredicted RBP4.02□□□□□ -1.77
NEK3-205ENST00000610828 SYNE1Q8NF91 8797 aaKnown RBP4□□□□□ -1.77
NEK3-205ENST00000610828 KRTAP12-4P60329 112 aa3.9□□□□□ -1.79
NEK3-205ENST00000610828 KRTAP2-2Q9BYT5 123 aa3.89□□□□□ -1.79
NEK3-205ENST00000610828 KRTAP5-3Q6L8H2 238 aa3.82□□□□□ -1.8
NEK3-205ENST00000610828 NEBP20929 6669 aa3.76□□□□□ -1.81
NEK3-205ENST00000610828 LCE3DQ9BYE3 92 aa3.76□□□□□ -1.81
NEK3-205ENST00000610828 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
NEK3-205ENST00000610828 LCE3EQ5T5B0 92 aa3.68□□□□□ -1.82
NEK3-205ENST00000610828 KRTAP5-4Q6L8H1 288 aa3.66□□□□□ -1.82
NEK3-205ENST00000610828 MT3P25713 68 aa3.65□□□□□ -1.83
NEK3-205ENST00000610828 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
NEK3-205ENST00000610828 MT4P47944 62 aa3.55□□□□□ -1.84
NEK3-205ENST00000610828 LCE1EQ5T753 118 aa3.51□□□□□ -1.85
NEK3-205ENST00000610828 KRTAP20-2Q3LI61 65 aa3.45□□□□□ -1.86
NEK3-205ENST00000610828 PRM1P04553 51 aa3.44□□□□□ -1.86
NEK3-205ENST00000610828 HMCN1Q96RW7 5635 aa3.43□□□□□ -1.86
NEK3-205ENST00000610828 KRTAP5-2Q701N4 177 aa3.38□□□□□ -1.87
NEK3-205ENST00000610828 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
NEK3-205ENST00000610828 KRTAP20-1Q3LI63 56 aa3.34□□□□□ -1.87
NEK3-205ENST00000610828 MUC5ACP98088 5654 aa3.05□□□□□ -1.92
NEK3-205ENST00000610828 LCE1BQ5T7P3 118 aa2.98□□□□□ -1.93
NEK3-205ENST00000610828 KRTAP5-11Q6L8G4 156 aa2.93□□□□□ -1.94
NEK3-205ENST00000610828 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.9□□□□□ -1.94
NEK3-205ENST00000610828 KRTAP5-1Q6L8H4 278 aa2.9□□□□□ -1.94
NEK3-205ENST00000610828 KRTAP5-10Q6L8G5 202 aa2.88□□□□□ -1.95
NEK3-205ENST00000610828 LCE1CQ5T751 118 aa2.86□□□□□ -1.95
NEK3-205ENST00000610828 AHNAK2Q8IVF2 5795 aa2.82□□□□□ -1.96
NEK3-205ENST00000610828 KRTAP5-8O75690 187 aa2.79□□□□□ -1.96
NEK3-205ENST00000610828 KRTAP5-7Q6L8G8 165 aa2.71□□□□□ -1.98
NEK3-205ENST00000610828 KRTAP21-2Q3LI59 83 aa2.63□□□□□ -1.99
NEK3-205ENST00000610828 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
NEK3-205ENST00000610828 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
NEK3-205ENST00000610828 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
NEK3-205ENST00000610828 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
NEK3-205ENST00000610828 PHGR1C9JFL3 82 aa2.15□□□□□ -2.07
NEK3-205ENST00000610828 KRTAP21-1Q3LI58 79 aa2.12□□□□□ -2.07
NEK3-205ENST00000610828 AHNAKQ09666 5890 aaKnown RBP1.97□□□□□ -2.09
NEK3-205ENST00000610828 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 9.9 ms