RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 SYNE1Q8NF91 8797 aaKnown RBP6.92□□□□□ -1.3
SSBP3-216ENST00000610401 OBSCNQ5VST9 7968 aa6.89□□□□□ -1.31
SSBP3-216ENST00000610401 MT1EP04732 61 aa6.88□□□□□ -1.31
SSBP3-216ENST00000610401 KRTAP2-3P0C7H8 128 aa6.85□□□□□ -1.31
SSBP3-216ENST00000610401 KRTAP2-4Q9BYR9 128 aa6.85□□□□□ -1.31
SSBP3-216ENST00000610401 KRTAP2-1Q9BYU5 128 aa6.85□□□□□ -1.31
SSBP3-216ENST00000610401 MT1GP13640 62 aa6.81□□□□□ -1.32
SSBP3-216ENST00000610401 SYNE2Q8WXH0 6885 aaKnown RBP6.6□□□□□ -1.35
SSBP3-216ENST00000610401 LCE2DQ5TA82 110 aaPredicted RBP6.57□□□□□ -1.36
SSBP3-216ENST00000610401 KRTAP12-4P60329 112 aa6.49□□□□□ -1.37
SSBP3-216ENST00000610401 MACF1Q9UPN3 7388 aaKnown RBP6.46□□□□□ -1.38
SSBP3-216ENST00000610401 KRTAP4-9Q9BYQ8 210 aa6.46□□□□□ -1.38
SSBP3-216ENST00000610401 KRTAP19-4Q3LI73 84 aa6.45□□□□□ -1.38
SSBP3-216ENST00000610401 MT1MQ8N339 61 aa6.45□□□□□ -1.38
SSBP3-216ENST00000610401 LCE3BQ5TA77 95 aa6.43□□□□□ -1.38
SSBP3-216ENST00000610401 KRTAP19-6Q3LI70 58 aa6.39□□□□□ -1.39
SSBP3-216ENST00000610401 MDN1Q9NU22 5596 aa6.39□□□□□ -1.39
SSBP3-216ENST00000610401 KRTAP19-3Q7Z4W3 81 aa6.39□□□□□ -1.39
SSBP3-216ENST00000610401 SPRR2FQ96RM1 72 aa6.38□□□□□ -1.39
SSBP3-216ENST00000610401 LCE5AQ5TCM9 118 aa6.06□□□□□ -1.44
SSBP3-216ENST00000610401 KRTAP6-1Q3LI64 71 aa6.03□□□□□ -1.44
SSBP3-216ENST00000610401 KRTAP9-7A8MTY7 169 aa5.92□□□□□ -1.46
SSBP3-216ENST00000610401 LCE3DQ9BYE3 92 aa5.88□□□□□ -1.47
SSBP3-216ENST00000610401 KRTAP9-2Q9BYQ4 174 aa5.88□□□□□ -1.47
SSBP3-216ENST00000610401 PRM1P04553 51 aa5.79□□□□□ -1.48
SSBP3-216ENST00000610401 LCE3EQ5T5B0 92 aa5.75□□□□□ -1.49
SSBP3-216ENST00000610401 MT1AP04731 61 aa5.68□□□□□ -1.5
SSBP3-216ENST00000610401 KRTAP5-5Q701N2 237 aaPredicted RBP5.65□□□□□ -1.5
SSBP3-216ENST00000610401 SPRR2EP22531 72 aa5.65□□□□□ -1.51
SSBP3-216ENST00000610401 SPRR2BP35325 72 aa5.65□□□□□ -1.51
SSBP3-216ENST00000610401 SPRR2AP35326 72 aa5.65□□□□□ -1.51
SSBP3-216ENST00000610401 LCE1AQ5T7P2 110 aa5.64□□□□□ -1.51
SSBP3-216ENST00000610401 KRTAP6-2Q3LI66 62 aa5.49□□□□□ -1.53
SSBP3-216ENST00000610401 KRTAP9-4Q9BYQ2 154 aa5.36□□□□□ -1.55
SSBP3-216ENST00000610401 SPRR2DP22532 72 aa5.34□□□□□ -1.55
SSBP3-216ENST00000610401 KRTAP5-9P26371 169 aa5.27□□□□□ -1.57
SSBP3-216ENST00000610401 MT3P25713 68 aa5.16□□□□□ -1.58
SSBP3-216ENST00000610401 KRTAP6-3Q3LI67 103 aa5.05□□□□□ -1.6
SSBP3-216ENST00000610401 MT4P47944 62 aa5.02□□□□□ -1.61
SSBP3-216ENST00000610401 KRTAP9-6A0A140TA67 174 aa4.99□□□□□ -1.61
SSBP3-216ENST00000610401 KRTAP2-2Q9BYT5 123 aa4.95□□□□□ -1.62
SSBP3-216ENST00000610401 KRTAP4-6Q9BYQ5 205 aa4.94□□□□□ -1.62
SSBP3-216ENST00000610401 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.84□□□□□ -1.63
SSBP3-216ENST00000610401 LCE1EQ5T753 118 aa4.74□□□□□ -1.65
SSBP3-216ENST00000610401 NEBP20929 6669 aa4.73□□□□□ -1.65
SSBP3-216ENST00000610401 HMCN1Q96RW7 5635 aa4.71□□□□□ -1.65
SSBP3-216ENST00000610401 MUC19Q7Z5P9 8384 aa4.7□□□□□ -1.66
SSBP3-216ENST00000610401 LCE1DQ5T752 114 aa4.69□□□□□ -1.66
SSBP3-216ENST00000610401 MUC5ACP98088 5654 aa4.66□□□□□ -1.66
SSBP3-216ENST00000610401 LCE1BQ5T7P3 118 aa4.58□□□□□ -1.68
SSBP3-216ENST00000610401 KRTAP5-4Q6L8H1 288 aa4.57□□□□□ -1.68
SSBP3-216ENST00000610401 KRTAP20-2Q3LI61 65 aa4.55□□□□□ -1.68
SSBP3-216ENST00000610401 KRTAP4-11Q9BYQ6 195 aa4.49□□□□□ -1.69
SSBP3-216ENST00000610401 KRTAP5-2Q701N4 177 aa4.32□□□□□ -1.72
SSBP3-216ENST00000610401 LCE4AQ5TA78 99 aa4.22□□□□□ -1.73
SSBP3-216ENST00000610401 KRTAP5-3Q6L8H2 238 aa4.16□□□□□ -1.74
SSBP3-216ENST00000610401 KRTAP5-10Q6L8G5 202 aa4.14□□□□□ -1.75
SSBP3-216ENST00000610401 KRTAP20-1Q3LI63 56 aa4.03□□□□□ -1.76
SSBP3-216ENST00000610401 KRTAP4-4Q9BYR3 166 aa3.96□□□□□ -1.78
SSBP3-216ENST00000610401 KRTAP4-2Q9BYR5 136 aa3.92□□□□□ -1.78
SSBP3-216ENST00000610401 KRTAP5-1Q6L8H4 278 aa3.9□□□□□ -1.79
SSBP3-216ENST00000610401 MUC5BQ9HC84 5762 aaPredicted RBP3.83□□□□□ -1.8
SSBP3-216ENST00000610401 LCE1FQ5T754 118 aa3.78□□□□□ -1.8
SSBP3-216ENST00000610401 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
SSBP3-216ENST00000610401 KRTAP21-2Q3LI59 83 aa3.73□□□□□ -1.81
SSBP3-216ENST00000610401 AHNAK2Q8IVF2 5795 aa3.73□□□□□ -1.81
SSBP3-216ENST00000610401 KRTAP4-12Q9BQ66 201 aa3.63□□□□□ -1.83
SSBP3-216ENST00000610401 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.52□□□□□ -1.85
SSBP3-216ENST00000610401 KRTAP5-8O75690 187 aa3.47□□□□□ -1.85
SSBP3-216ENST00000610401 KRTAP21-1Q3LI58 79 aa3.35□□□□□ -1.87
SSBP3-216ENST00000610401 KRTAP5-7Q6L8G8 165 aa3.28□□□□□ -1.88
SSBP3-216ENST00000610401 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
SSBP3-216ENST00000610401 KRTAP5-11Q6L8G4 156 aa3.17□□□□□ -1.9
SSBP3-216ENST00000610401 GPR98Q8WXG9 6306 aa3.08□□□□□ -1.92
SSBP3-216ENST00000610401 PHGR1C9JFL3 82 aa2.82□□□□□ -1.96
SSBP3-216ENST00000610401 AHNAKQ09666 5890 aaKnown RBP2.71□□□□□ -1.98
SSBP3-216ENST00000610401 MUC16Q8WXI7 14507 aa1.98□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 6 ms