RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 FCGBPQ9Y6R7 5405 aaPredicted RBP6.7□□□□□ -1.34
SHKBP1-225ENST00000600733 KRTAP4-3Q9BYR4 195 aa6.69□□□□□ -1.34
SHKBP1-225ENST00000600733 LCE2DQ5TA82 110 aaPredicted RBP6.66□□□□□ -1.34
SHKBP1-225ENST00000600733 LOC100996750A0A140TA64 210 aa6.65□□□□□ -1.34
SHKBP1-225ENST00000600733 MUC12Q9UKN1 5478 aa6.64□□□□□ -1.35
SHKBP1-225ENST00000600733 MT1GP13640 62 aa6.57□□□□□ -1.36
SHKBP1-225ENST00000600733 MT1MQ8N339 61 aa6.55□□□□□ -1.36
SHKBP1-225ENST00000600733 KRTAP19-3Q7Z4W3 81 aa6.54□□□□□ -1.36
SHKBP1-225ENST00000600733 CRCT1Q9UGL9 99 aa6.45□□□□□ -1.38
SHKBP1-225ENST00000600733 KRTAP9-2Q9BYQ4 174 aa6.34□□□□□ -1.39
SHKBP1-225ENST00000600733 SPRR2FQ96RM1 72 aa6.33□□□□□ -1.4
SHKBP1-225ENST00000600733 DSTQ03001 7570 aaKnown RBP6.33□□□□□ -1.4
SHKBP1-225ENST00000600733 LCE5AQ5TCM9 118 aa6.32□□□□□ -1.4
SHKBP1-225ENST00000600733 MACF1Q9UPN3 7388 aaKnown RBP6.19□□□□□ -1.42
SHKBP1-225ENST00000600733 KRTAP12-4P60329 112 aa6.11□□□□□ -1.43
SHKBP1-225ENST00000600733 LCE3BQ5TA77 95 aa6.09□□□□□ -1.44
SHKBP1-225ENST00000600733 MDN1Q9NU22 5596 aa6.01□□□□□ -1.45
SHKBP1-225ENST00000600733 SYNE2Q8WXH0 6885 aaKnown RBP6.01□□□□□ -1.45
SHKBP1-225ENST00000600733 KRTAP4-9Q9BYQ8 210 aa5.99□□□□□ -1.45
SHKBP1-225ENST00000600733 KRTAP6-1Q3LI64 71 aa5.97□□□□□ -1.45
SHKBP1-225ENST00000600733 KRTAP9-6A0A140TA67 174 aa5.93□□□□□ -1.46
SHKBP1-225ENST00000600733 LCE1AQ5T7P2 110 aa5.89□□□□□ -1.47
SHKBP1-225ENST00000600733 SYNE1Q8NF91 8797 aaKnown RBP5.88□□□□□ -1.47
SHKBP1-225ENST00000600733 MT1AP04731 61 aa5.86□□□□□ -1.47
SHKBP1-225ENST00000600733 KRTAP5-9P26371 169 aa5.82□□□□□ -1.48
SHKBP1-225ENST00000600733 KRTAP5-5Q701N2 237 aaPredicted RBP5.78□□□□□ -1.48
SHKBP1-225ENST00000600733 SPRR2EP22531 72 aa5.73□□□□□ -1.49
SHKBP1-225ENST00000600733 SPRR2BP35325 72 aa5.73□□□□□ -1.49
SHKBP1-225ENST00000600733 SPRR2AP35326 72 aa5.73□□□□□ -1.49
SHKBP1-225ENST00000600733 LCE3DQ9BYE3 92 aa5.71□□□□□ -1.5
SHKBP1-225ENST00000600733 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.63□□□□□ -1.51
SHKBP1-225ENST00000600733 LCE3EQ5T5B0 92 aa5.62□□□□□ -1.51
SHKBP1-225ENST00000600733 KRTAP9-4Q9BYQ2 154 aa5.52□□□□□ -1.53
SHKBP1-225ENST00000600733 KRTAP9-7A8MTY7 169 aa5.5□□□□□ -1.53
SHKBP1-225ENST00000600733 SPRR2DP22532 72 aa5.48□□□□□ -1.53
SHKBP1-225ENST00000600733 PRM1P04553 51 aa5.41□□□□□ -1.54
SHKBP1-225ENST00000600733 KRTAP6-3Q3LI67 103 aa5.39□□□□□ -1.55
SHKBP1-225ENST00000600733 KRTAP6-2Q3LI66 62 aa5.35□□□□□ -1.55
SHKBP1-225ENST00000600733 OBSCNQ5VST9 7968 aa5.29□□□□□ -1.56
SHKBP1-225ENST00000600733 MT3P25713 68 aa5.26□□□□□ -1.57
SHKBP1-225ENST00000600733 NEBP20929 6669 aa5.16□□□□□ -1.58
SHKBP1-225ENST00000600733 KRTAP5-4Q6L8H1 288 aa5.06□□□□□ -1.6
SHKBP1-225ENST00000600733 KRTAP4-6Q9BYQ5 205 aa4.93□□□□□ -1.62
SHKBP1-225ENST00000600733 MT4P47944 62 aa4.87□□□□□ -1.63
SHKBP1-225ENST00000600733 KRTAP20-2Q3LI61 65 aa4.77□□□□□ -1.65
SHKBP1-225ENST00000600733 KRTAP20-1Q3LI63 56 aa4.75□□□□□ -1.65
SHKBP1-225ENST00000600733 KRTAP5-2Q701N4 177 aa4.73□□□□□ -1.65
SHKBP1-225ENST00000600733 KRTAP2-2Q9BYT5 123 aa4.73□□□□□ -1.65
SHKBP1-225ENST00000600733 LCE4AQ5TA78 99 aa4.69□□□□□ -1.66
SHKBP1-225ENST00000600733 HMCN1Q96RW7 5635 aa4.64□□□□□ -1.67
SHKBP1-225ENST00000600733 LCE1DQ5T752 114 aa4.55□□□□□ -1.68
SHKBP1-225ENST00000600733 KRTAP5-3Q6L8H2 238 aa4.53□□□□□ -1.68
SHKBP1-225ENST00000600733 MUC5ACP98088 5654 aa4.49□□□□□ -1.69
SHKBP1-225ENST00000600733 LCE1BQ5T7P3 118 aa4.29□□□□□ -1.72
SHKBP1-225ENST00000600733 LCE1EQ5T753 118 aa4.27□□□□□ -1.73
SHKBP1-225ENST00000600733 KRTAP5-10Q6L8G5 202 aa4.18□□□□□ -1.74
SHKBP1-225ENST00000600733 KRTAP5-1Q6L8H4 278 aa4.12□□□□□ -1.75
SHKBP1-225ENST00000600733 KRTAP4-11Q9BYQ6 195 aa4.1□□□□□ -1.75
SHKBP1-225ENST00000600733 KRTAP4-2Q9BYR5 136 aa4.1□□□□□ -1.75
SHKBP1-225ENST00000600733 LCE1CQ5T751 118 aa4.05□□□□□ -1.76
SHKBP1-225ENST00000600733 AHNAK2Q8IVF2 5795 aa3.92□□□□□ -1.78
SHKBP1-225ENST00000600733 KRTAP21-2Q3LI59 83 aa3.84□□□□□ -1.79
SHKBP1-225ENST00000600733 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
SHKBP1-225ENST00000600733 GPR98Q8WXG9 6306 aa3.78□□□□□ -1.8
SHKBP1-225ENST00000600733 KRTAP5-8O75690 187 aa3.75□□□□□ -1.81
SHKBP1-225ENST00000600733 KRTAP5-7Q6L8G8 165 aa3.67□□□□□ -1.82
SHKBP1-225ENST00000600733 LCE1FQ5T754 118 aa3.6□□□□□ -1.83
SHKBP1-225ENST00000600733 KRTAP9-9Q9BYP9 154 aa3.57□□□□□ -1.84
SHKBP1-225ENST00000600733 KRTAP4-4Q9BYR3 166 aa3.56□□□□□ -1.84
SHKBP1-225ENST00000600733 KRTAP5-11Q6L8G4 156 aa3.47□□□□□ -1.85
SHKBP1-225ENST00000600733 MUC5BQ9HC84 5762 aaPredicted RBP3.42□□□□□ -1.86
SHKBP1-225ENST00000600733 KRTAP21-1Q3LI58 79 aa3.37□□□□□ -1.87
SHKBP1-225ENST00000600733 MUC19Q7Z5P9 8384 aa3.35□□□□□ -1.87
SHKBP1-225ENST00000600733 KRTAP4-12Q9BQ66 201 aa3.35□□□□□ -1.87
SHKBP1-225ENST00000600733 AHNAKQ09666 5890 aaKnown RBP3.06□□□□□ -1.92
SHKBP1-225ENST00000600733 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
SHKBP1-225ENST00000600733 MUC16Q8WXI7 14507 aa1.98□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 6.6 ms