RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 FCGBPQ9Y6R7 5405 aaPredicted RBP6.19□□□□□ -1.42
UPF1-210ENST00000600689 MT1LQ93083 61 aa6.17□□□□□ -1.42
UPF1-210ENST00000600689 LOC100996750A0A140TA64 210 aa6.17□□□□□ -1.42
UPF1-210ENST00000600689 MT1EP04732 61 aa6.15□□□□□ -1.43
UPF1-210ENST00000600689 KRTAP4-3Q9BYR4 195 aa6.13□□□□□ -1.43
UPF1-210ENST00000600689 MUC12Q9UKN1 5478 aa6.12□□□□□ -1.43
UPF1-210ENST00000600689 DSTQ03001 7570 aaKnown RBP6.08□□□□□ -1.44
UPF1-210ENST00000600689 KRTAP9-2Q9BYQ4 174 aa6.07□□□□□ -1.44
UPF1-210ENST00000600689 MT1GP13640 62 aa6.02□□□□□ -1.44
UPF1-210ENST00000600689 MACF1Q9UPN3 7388 aaKnown RBP5.92□□□□□ -1.46
UPF1-210ENST00000600689 KRTAP12-4P60329 112 aa5.9□□□□□ -1.46
UPF1-210ENST00000600689 SYNE1Q8NF91 8797 aaKnown RBP5.87□□□□□ -1.47
UPF1-210ENST00000600689 KRTAP19-4Q3LI73 84 aa5.82□□□□□ -1.48
UPF1-210ENST00000600689 SYNE2Q8WXH0 6885 aaKnown RBP5.8□□□□□ -1.48
UPF1-210ENST00000600689 KRTAP19-3Q7Z4W3 81 aa5.78□□□□□ -1.48
UPF1-210ENST00000600689 MT1MQ8N339 61 aa5.76□□□□□ -1.49
UPF1-210ENST00000600689 SPRR2FQ96RM1 72 aa5.75□□□□□ -1.49
UPF1-210ENST00000600689 KRTAP4-9Q9BYQ8 210 aa5.74□□□□□ -1.49
UPF1-210ENST00000600689 LCE3BQ5TA77 95 aa5.72□□□□□ -1.49
UPF1-210ENST00000600689 KRTAP9-6A0A140TA67 174 aa5.7□□□□□ -1.5
UPF1-210ENST00000600689 MDN1Q9NU22 5596 aa5.69□□□□□ -1.5
UPF1-210ENST00000600689 OBSCNQ5VST9 7968 aa5.65□□□□□ -1.5
UPF1-210ENST00000600689 LCE5AQ5TCM9 118 aa5.62□□□□□ -1.51
UPF1-210ENST00000600689 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.42□□□□□ -1.54
UPF1-210ENST00000600689 KRTAP9-7A8MTY7 169 aa5.37□□□□□ -1.55
UPF1-210ENST00000600689 LCE1AQ5T7P2 110 aa5.37□□□□□ -1.55
UPF1-210ENST00000600689 KRTAP6-1Q3LI64 71 aa5.35□□□□□ -1.55
UPF1-210ENST00000600689 KRTAP5-9P26371 169 aa5.34□□□□□ -1.55
UPF1-210ENST00000600689 LCE3DQ9BYE3 92 aa5.3□□□□□ -1.56
UPF1-210ENST00000600689 PRM1P04553 51 aa5.29□□□□□ -1.56
UPF1-210ENST00000600689 SPRR2EP22531 72 aa5.27□□□□□ -1.57
UPF1-210ENST00000600689 SPRR2BP35325 72 aa5.27□□□□□ -1.57
UPF1-210ENST00000600689 SPRR2AP35326 72 aa5.27□□□□□ -1.57
UPF1-210ENST00000600689 KRTAP6-3Q3LI67 103 aa5.27□□□□□ -1.57
UPF1-210ENST00000600689 LCE3EQ5T5B0 92 aa5.22□□□□□ -1.57
UPF1-210ENST00000600689 KRTAP5-5Q701N2 237 aaPredicted RBP5.16□□□□□ -1.58
UPF1-210ENST00000600689 MT1AP04731 61 aa5.13□□□□□ -1.59
UPF1-210ENST00000600689 SPRR2DP22532 72 aa5.04□□□□□ -1.6
UPF1-210ENST00000600689 KRTAP6-2Q3LI66 62 aa4.98□□□□□ -1.61
UPF1-210ENST00000600689 NEBP20929 6669 aa4.92□□□□□ -1.62
UPF1-210ENST00000600689 KRTAP2-2Q9BYT5 123 aa4.87□□□□□ -1.63
UPF1-210ENST00000600689 KRTAP9-4Q9BYQ2 154 aa4.83□□□□□ -1.64
UPF1-210ENST00000600689 LCE1EQ5T753 118 aa4.8□□□□□ -1.64
UPF1-210ENST00000600689 MT3P25713 68 aa4.59□□□□□ -1.67
UPF1-210ENST00000600689 KRTAP20-1Q3LI63 56 aa4.58□□□□□ -1.68
UPF1-210ENST00000600689 KRTAP5-4Q6L8H1 288 aa4.57□□□□□ -1.68
UPF1-210ENST00000600689 LCE1FQ5T754 118 aa4.56□□□□□ -1.68
UPF1-210ENST00000600689 LCE1DQ5T752 114 aa4.53□□□□□ -1.68
UPF1-210ENST00000600689 KRTAP4-6Q9BYQ5 205 aa4.53□□□□□ -1.68
UPF1-210ENST00000600689 MT4P47944 62 aa4.51□□□□□ -1.69
UPF1-210ENST00000600689 HMCN1Q96RW7 5635 aa4.38□□□□□ -1.71
UPF1-210ENST00000600689 KRTAP20-2Q3LI61 65 aa4.34□□□□□ -1.72
UPF1-210ENST00000600689 LCE4AQ5TA78 99 aa4.31□□□□□ -1.72
UPF1-210ENST00000600689 KRTAP5-2Q701N4 177 aa4.23□□□□□ -1.73
UPF1-210ENST00000600689 KRTAP5-3Q6L8H2 238 aa4.13□□□□□ -1.75
UPF1-210ENST00000600689 KRTAP4-11Q9BYQ6 195 aa4.06□□□□□ -1.76
UPF1-210ENST00000600689 MUC5ACP98088 5654 aa4.06□□□□□ -1.76
UPF1-210ENST00000600689 MUC19Q7Z5P9 8384 aa4.04□□□□□ -1.76
UPF1-210ENST00000600689 LCE1BQ5T7P3 118 aa3.98□□□□□ -1.77
UPF1-210ENST00000600689 KRTAP9-9Q9BYP9 154 aa3.79□□□□□ -1.8
UPF1-210ENST00000600689 KRTAP5-10Q6L8G5 202 aa3.74□□□□□ -1.81
UPF1-210ENST00000600689 AHNAK2Q8IVF2 5795 aa3.74□□□□□ -1.81
UPF1-210ENST00000600689 KRTAP5-1Q6L8H4 278 aa3.67□□□□□ -1.82
UPF1-210ENST00000600689 KRTAP4-2Q9BYR5 136 aa3.65□□□□□ -1.82
UPF1-210ENST00000600689 LCE1CQ5T751 118 aa3.58□□□□□ -1.84
UPF1-210ENST00000600689 KRTAP5-8O75690 187 aa3.49□□□□□ -1.85
UPF1-210ENST00000600689 GPR98Q8WXG9 6306 aa3.46□□□□□ -1.86
UPF1-210ENST00000600689 KRTAP4-4Q9BYR3 166 aa3.44□□□□□ -1.86
UPF1-210ENST00000600689 KRTAP5-7Q6L8G8 165 aa3.43□□□□□ -1.86
UPF1-210ENST00000600689 KRTAP21-2Q3LI59 83 aa3.37□□□□□ -1.87
UPF1-210ENST00000600689 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.33□□□□□ -1.88
UPF1-210ENST00000600689 MUC5BQ9HC84 5762 aaPredicted RBP3.3□□□□□ -1.88
UPF1-210ENST00000600689 KRTAP21-1Q3LI58 79 aa3.13□□□□□ -1.91
UPF1-210ENST00000600689 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.91
UPF1-210ENST00000600689 KRTAP5-11Q6L8G4 156 aa3.08□□□□□ -1.92
UPF1-210ENST00000600689 AHNAKQ09666 5890 aaKnown RBP2.9□□□□□ -1.95
UPF1-210ENST00000600689 PHGR1C9JFL3 82 aa2.7□□□□□ -1.98
UPF1-210ENST00000600689 MUC16Q8WXI7 14507 aa1.75□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 128.4 ms