RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 LCE3CQ5T5A8 94 aa4.52□□□□□ -1.69
VRK3-208ENST00000594104 KRTAP10-7P60409 375 aaPredicted RBP4.5□□□□□ -1.69
VRK3-208ENST00000594104 INE1O15225 51 aa4.37□□□□□ -1.71
VRK3-208ENST00000594104 LCE1DQ5T752 114 aa4.33□□□□□ -1.72
VRK3-208ENST00000594104 KRTAP19-5Q3LI72 72 aa4.33□□□□□ -1.72
VRK3-208ENST00000594104 KRTAP4-8A0A0G2JLE6 195 aa4.19□□□□□ -1.74
VRK3-208ENST00000594104 KRTAP19-6Q3LI70 58 aa4.19□□□□□ -1.74
VRK3-208ENST00000594104 KRTAP19-7Q3SYF9 63 aa4.18□□□□□ -1.74
VRK3-208ENST00000594104 LCE3EQ5T5B0 92 aa4.16□□□□□ -1.74
VRK3-208ENST00000594104 USH2AO75445 5202 aa4.13□□□□□ -1.75
VRK3-208ENST00000594104 KRTAP4-11Q9BYQ6 195 aa4.1□□□□□ -1.75
VRK3-208ENST00000594104 MT1EP04732 61 aa4.09□□□□□ -1.75
VRK3-208ENST00000594104 MT1LQ93083 61 aa4.07□□□□□ -1.76
VRK3-208ENST00000594104 KRTAP4-9Q9BYQ8 210 aa4.05□□□□□ -1.76
VRK3-208ENST00000594104 SSPOA2VEC9 5147 aa4.02□□□□□ -1.77
VRK3-208ENST00000594104 KRTAP9-6A8MVA2 160 aa3.99□□□□□ -1.77
VRK3-208ENST00000594104 LCE1EQ5T753 118 aa3.96□□□□□ -1.78
VRK3-208ENST00000594104 KRTAP2-3P0C7H8 128 aa3.94□□□□□ -1.78
VRK3-208ENST00000594104 KRTAP2-4Q9BYR9 128 aa3.94□□□□□ -1.78
VRK3-208ENST00000594104 KRTAP2-1Q9BYU5 128 aa3.94□□□□□ -1.78
VRK3-208ENST00000594104 KRTAP4-7Q9BYR0 210 aa3.93□□□□□ -1.78
VRK3-208ENST00000594104 MT1GP13640 62 aa3.89□□□□□ -1.79
VRK3-208ENST00000594104 KMT2DO14686 5537 aa3.89□□□□□ -1.79
VRK3-208ENST00000594104 KRTAP19-3Q7Z4W3 81 aa3.86□□□□□ -1.79
VRK3-208ENST00000594104 FSIP2Q5CZC0 6907 aa3.86□□□□□ -1.79
VRK3-208ENST00000594104 MT1MQ8N339 61 aa3.82□□□□□ -1.8
VRK3-208ENST00000594104 KRTAP6-3Q3LI67 103 aa3.76□□□□□ -1.81
VRK3-208ENST00000594104 LCE3DQ9BYE3 92 aa3.76□□□□□ -1.81
VRK3-208ENST00000594104 KRTAP4-2Q9BYR5 136 aa3.73□□□□□ -1.81
VRK3-208ENST00000594104 FCGBPQ9Y6R7 5405 aaPredicted RBP3.72□□□□□ -1.81
VRK3-208ENST00000594104 KRTAP4-3Q9BYR4 195 aa3.71□□□□□ -1.82
VRK3-208ENST00000594104 SPRR2FQ96RM1 72 aa3.7□□□□□ -1.82
VRK3-208ENST00000594104 CRCT1Q9UGL9 99 aa3.63□□□□□ -1.83
VRK3-208ENST00000594104 KRTAP5-9P26371 169 aa3.59□□□□□ -1.84
VRK3-208ENST00000594104 MUC12Q9UKN1 5478 aa3.52□□□□□ -1.85
VRK3-208ENST00000594104 MT1AP04731 61 aa3.47□□□□□ -1.85
VRK3-208ENST00000594104 KRTAP12-4P60329 112 aa3.44□□□□□ -1.86
VRK3-208ENST00000594104 SPRR2EP22531 72 aa3.42□□□□□ -1.86
VRK3-208ENST00000594104 SPRR2BP35325 72 aa3.42□□□□□ -1.86
VRK3-208ENST00000594104 SPRR2AP35326 72 aa3.42□□□□□ -1.86
VRK3-208ENST00000594104 KRTAP5-5Q701N2 237 aaPredicted RBP3.42□□□□□ -1.86
VRK3-208ENST00000594104 KRTAP6-1Q3LI64 71 aa3.41□□□□□ -1.86
VRK3-208ENST00000594104 SYNE2Q8WXH0 6885 aaKnown RBP3.38□□□□□ -1.87
VRK3-208ENST00000594104 MACF1Q9UPN3 7388 aaKnown RBP3.37□□□□□ -1.87
VRK3-208ENST00000594104 SPRR2DP22532 72 aa3.29□□□□□ -1.88
VRK3-208ENST00000594104 KRTAP5-3Q6L8H2 238 aa3.24□□□□□ -1.89
VRK3-208ENST00000594104 MDN1Q9NU22 5596 aa3.21□□□□□ -1.9
VRK3-208ENST00000594104 DSTQ03001 7570 aaKnown RBP3.17□□□□□ -1.9
VRK3-208ENST00000594104 NEBP20929 6669 aa3.13□□□□□ -1.91
VRK3-208ENST00000594104 KRTAP5-4Q6L8H1 288 aa3.1□□□□□ -1.91
VRK3-208ENST00000594104 KRTAP6-2Q3LI66 62 aa3.07□□□□□ -1.92
VRK3-208ENST00000594104 SYNE1Q8NF91 8797 aaKnown RBP3.01□□□□□ -1.93
VRK3-208ENST00000594104 PRM1P04553 51 aa2.95□□□□□ -1.94
VRK3-208ENST00000594104 KRTAP20-1Q3LI63 56 aa2.91□□□□□ -1.94
VRK3-208ENST00000594104 KRTAP5-2Q701N4 177 aa2.88□□□□□ -1.95
VRK3-208ENST00000594104 KRTAP20-2Q3LI61 65 aa2.86□□□□□ -1.95
VRK3-208ENST00000594104 MT4P47944 62 aa2.81□□□□□ -1.96
VRK3-208ENST00000594104 KRTAP5-11Q6L8G4 156 aa2.8□□□□□ -1.96
VRK3-208ENST00000594104 GPR98Q8WXG9 6306 aa2.66□□□□□ -1.98
VRK3-208ENST00000594104 OBSCNQ5VST9 7968 aa2.62□□□□□ -1.99
VRK3-208ENST00000594104 HMCN1Q96RW7 5635 aa2.61□□□□□ -1.99
VRK3-208ENST00000594104 LCE1CQ5T751 118 aa2.48□□□□□ -2.01
VRK3-208ENST00000594104 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
VRK3-208ENST00000594104 KRTAP5-10Q6L8G5 202 aa2.47□□□□□ -2.01
VRK3-208ENST00000594104 KRTAP5-1Q6L8H4 278 aa2.46□□□□□ -2.02
VRK3-208ENST00000594104 MUC5ACP98088 5654 aa2.44□□□□□ -2.02
VRK3-208ENST00000594104 AHNAK2Q8IVF2 5795 aa2.42□□□□□ -2.02
VRK3-208ENST00000594104 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.36□□□□□ -2.03
VRK3-208ENST00000594104 KRTAP5-7Q6L8G8 165 aa2.34□□□□□ -2.03
VRK3-208ENST00000594104 KRTAP5-8O75690 187 aa2.34□□□□□ -2.04
VRK3-208ENST00000594104 KRTAP21-2Q3LI59 83 aa2.23□□□□□ -2.05
VRK3-208ENST00000594104 AHNAKQ09666 5890 aaKnown RBP2.15□□□□□ -2.07
VRK3-208ENST00000594104 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
VRK3-208ENST00000594104 MUC5BQ9HC84 5762 aaPredicted RBP2.05□□□□□ -2.08
VRK3-208ENST00000594104 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
VRK3-208ENST00000594104 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
VRK3-208ENST00000594104 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
VRK3-208ENST00000594104 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 40.5 ms