RNA–Protein interactions for RNA: ENST00000590347.5

CIRBP-228, Transcript of cold inducible RNA binding protein, human

TSL 2

Gene CIRBP, Length 3,117 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-228	ENST00000590347	LOC100996750	A0A140TA64	210 aa		5.11	□□□□□ -1.59
CIRBP-228	ENST00000590347	SYNE1	Q8NF91	8797 aa	Known RBP	5.09	□□□□□ -1.59
CIRBP-228	ENST00000590347	OBSCN	Q5VST9	7968 aa		5.06	□□□□□ -1.6
CIRBP-228	ENST00000590347	KRTAP19-7	Q3SYF9	63 aa		5.03	□□□□□ -1.6
CIRBP-228	ENST00000590347	MUC12	Q9UKN1	5478 aa		5.02	□□□□□ -1.61
CIRBP-228	ENST00000590347	KRTAP4-3	Q9BYR4	195 aa		5.01	□□□□□ -1.61
CIRBP-228	ENST00000590347	LCE2D	Q5TA82	110 aa	Predicted RBP	4.98	□□□□□ -1.61
CIRBP-228	ENST00000590347	MT1L	Q93083	61 aa		4.91	□□□□□ -1.62
CIRBP-228	ENST00000590347	MT1G	P13640	62 aa		4.9	□□□□□ -1.62
CIRBP-228	ENST00000590347	KRTAP19-6	Q3LI70	58 aa		4.9	□□□□□ -1.62
CIRBP-228	ENST00000590347	KRTAP4-9	Q9BYQ8	210 aa		4.9	□□□□□ -1.62
CIRBP-228	ENST00000590347	KRTAP9-2	Q9BYQ4	174 aa		4.9	□□□□□ -1.63
CIRBP-228	ENST00000590347	MACF1	Q9UPN3	7388 aa	Known RBP	4.87	□□□□□ -1.63
CIRBP-228	ENST00000590347	SYNE2	Q8WXH0	6885 aa	Known RBP	4.83	□□□□□ -1.64
CIRBP-228	ENST00000590347	MT1E	P04732	61 aa		4.83	□□□□□ -1.64
CIRBP-228	ENST00000590347	LCE3B	Q5TA77	95 aa		4.76	□□□□□ -1.65
CIRBP-228	ENST00000590347	KRTAP9-7	A8MTY7	169 aa		4.72	□□□□□ -1.65
CIRBP-228	ENST00000590347	SPRR2F	Q96RM1	72 aa		4.68	□□□□□ -1.66
CIRBP-228	ENST00000590347	MDN1	Q9NU22	5596 aa		4.66	□□□□□ -1.66
CIRBP-228	ENST00000590347	PRM1	P04553	51 aa		4.64	□□□□□ -1.67
CIRBP-228	ENST00000590347	KRTAP19-3	Q7Z4W3	81 aa		4.56	□□□□□ -1.68
CIRBP-228	ENST00000590347	MT1M	Q8N339	61 aa		4.54	□□□□□ -1.68
CIRBP-228	ENST00000590347	KRTAP9-6	A0A140TA67	174 aa		4.53	□□□□□ -1.68
CIRBP-228	ENST00000590347	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.45	□□□□□ -1.7
CIRBP-228	ENST00000590347	KRTAP6-3	Q3LI67	103 aa		4.43	□□□□□ -1.7
CIRBP-228	ENST00000590347	LCE3D	Q9BYE3	92 aa		4.41	□□□□□ -1.7
CIRBP-228	ENST00000590347	LCE1A	Q5T7P2	110 aa		4.41	□□□□□ -1.7
CIRBP-228	ENST00000590347	LCE5A	Q5TCM9	118 aa		4.41	□□□□□ -1.7
CIRBP-228	ENST00000590347	LCE3E	Q5T5B0	92 aa		4.37	□□□□□ -1.71
CIRBP-228	ENST00000590347	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.35	□□□□□ -1.71
CIRBP-228	ENST00000590347	KRTAP19-4	Q3LI73	84 aa		4.32	□□□□□ -1.72
CIRBP-228	ENST00000590347	KRTAP6-1	Q3LI64	71 aa		4.31	□□□□□ -1.72
CIRBP-228	ENST00000590347	SPRR2E	P22531	72 aa		4.29	□□□□□ -1.72
CIRBP-228	ENST00000590347	SPRR2B	P35325	72 aa		4.29	□□□□□ -1.72
CIRBP-228	ENST00000590347	SPRR2A	P35326	72 aa		4.29	□□□□□ -1.72
CIRBP-228	ENST00000590347	KRTAP2-2	Q9BYT5	123 aa		4.26	□□□□□ -1.73
CIRBP-228	ENST00000590347	KRTAP6-2	Q3LI66	62 aa		4.26	□□□□□ -1.73
CIRBP-228	ENST00000590347	KRTAP5-9	P26371	169 aa		4.22	□□□□□ -1.73
CIRBP-228	ENST00000590347	LCE1E	Q5T753	118 aa		4.22	□□□□□ -1.73
CIRBP-228	ENST00000590347	MT1A	P04731	61 aa		4.17	□□□□□ -1.74
CIRBP-228	ENST00000590347	SPRR2D	P22532	72 aa		4.09	□□□□□ -1.75
CIRBP-228	ENST00000590347	LCE1D	Q5T752	114 aa		4	□□□□□ -1.77
CIRBP-228	ENST00000590347	NEB	P20929	6669 aa		3.96	□□□□□ -1.77
CIRBP-228	ENST00000590347	LCE1F	Q5T754	118 aa		3.88	□□□□□ -1.79
CIRBP-228	ENST00000590347	MUC19	Q7Z5P9	8384 aa		3.79	□□□□□ -1.8
CIRBP-228	ENST00000590347	KRTAP9-4	Q9BYQ2	154 aa		3.77	□□□□□ -1.81
CIRBP-228	ENST00000590347	MT4	P47944	62 aa		3.75	□□□□□ -1.81
CIRBP-228	ENST00000590347	KRTAP4-6	Q9BYQ5	205 aa		3.69	□□□□□ -1.82
CIRBP-228	ENST00000590347	KRTAP20-1	Q3LI63	56 aa		3.65	□□□□□ -1.82
CIRBP-228	ENST00000590347	MT3	P25713	68 aa		3.61	□□□□□ -1.83
CIRBP-228	ENST00000590347	KRTAP4-11	Q9BYQ6	195 aa		3.57	□□□□□ -1.84
CIRBP-228	ENST00000590347	HMCN1	Q96RW7	5635 aa		3.56	□□□□□ -1.84
CIRBP-228	ENST00000590347	KRTAP5-4	Q6L8H1	288 aa		3.53	□□□□□ -1.84
CIRBP-228	ENST00000590347	KRTAP20-2	Q3LI61	65 aa		3.45	□□□□□ -1.86
CIRBP-228	ENST00000590347	LCE4A	Q5TA78	99 aa		3.44	□□□□□ -1.86
CIRBP-228	ENST00000590347	MUC5AC	P98088	5654 aa		3.4	□□□□□ -1.87
CIRBP-228	ENST00000590347	KRTAP5-2	Q701N4	177 aa		3.24	□□□□□ -1.89
CIRBP-228	ENST00000590347	KRTAP5-3	Q6L8H2	238 aa		3.23	□□□□□ -1.89
CIRBP-228	ENST00000590347	LCE1B	Q5T7P3	118 aa		3.18	□□□□□ -1.9
CIRBP-228	ENST00000590347	KRTAP5-10	Q6L8G5	202 aa		3.08	□□□□□ -1.92
CIRBP-228	ENST00000590347	KRTAP9-9	Q9BYP9	154 aa		3.01	□□□□□ -1.93
CIRBP-228	ENST00000590347	AHNAK2	Q8IVF2	5795 aa		3	□□□□□ -1.93
CIRBP-228	ENST00000590347	KRTAP5-1	Q6L8H4	278 aa		2.88	□□□□□ -1.95
CIRBP-228	ENST00000590347	KRTAP4-4	Q9BYR3	166 aa		2.88	□□□□□ -1.95
CIRBP-228	ENST00000590347	KRTAP4-2	Q9BYR5	136 aa		2.86	□□□□□ -1.95
CIRBP-228	ENST00000590347	LCE1C	Q5T751	118 aa		2.82	□□□□□ -1.96
CIRBP-228	ENST00000590347	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.8	□□□□□ -1.96
CIRBP-228	ENST00000590347	GPR98	Q8WXG9	6306 aa		2.78	□□□□□ -1.96
CIRBP-228	ENST00000590347	KRTAP5-8	O75690	187 aa		2.78	□□□□□ -1.96
CIRBP-228	ENST00000590347	KRTAP21-1	Q3LI58	79 aa		2.74	□□□□□ -1.97
CIRBP-228	ENST00000590347	KRTAP21-2	Q3LI59	83 aa		2.64	□□□□□ -1.99
CIRBP-228	ENST00000590347	KRTAP5-7	Q6L8G8	165 aa		2.63	□□□□□ -1.99
CIRBP-228	ENST00000590347	KRTAP4-12	Q9BQ66	201 aa		2.62	□□□□□ -1.99
CIRBP-228	ENST00000590347	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.49	□□□□□ -2.01
CIRBP-228	ENST00000590347	KRTAP5-11	Q6L8G4	156 aa		2.37	□□□□□ -2.03
CIRBP-228	ENST00000590347	AHNAK	Q09666	5890 aa	Known RBP	2.27	□□□□□ -2.05
CIRBP-228	ENST00000590347	PHGR1	C9JFL3	82 aa		2.09	□□□□□ -2.07
CIRBP-228	ENST00000590347	MUC16	Q8WXI7	14507 aa		1.46	□□□□□ -2.18

Retrieved 78 of 20,778 RNA–protein pairs in 6 ms