RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LCE3CQ5T5A8 94 aa5.09□□□□□ -1.59
LIG3-205ENST00000585941 MT1LQ93083 61 aa5.02□□□□□ -1.61
LIG3-205ENST00000585941 MACF1Q9UPN3 7388 aaKnown RBP4.98□□□□□ -1.61
LIG3-205ENST00000585941 SYNE2Q8WXH0 6885 aaKnown RBP4.93□□□□□ -1.62
LIG3-205ENST00000585941 KRTAP6-3Q3LI67 103 aa4.89□□□□□ -1.63
LIG3-205ENST00000585941 MT1GP13640 62 aa4.87□□□□□ -1.63
LIG3-205ENST00000585941 KRTAP19-3Q7Z4W3 81 aa4.87□□□□□ -1.63
LIG3-205ENST00000585941 SPRR2FQ96RM1 72 aa4.86□□□□□ -1.63
LIG3-205ENST00000585941 KRTAP4-7Q9BYR0 210 aa4.83□□□□□ -1.64
LIG3-205ENST00000585941 LOC100996750A0A140TA64 210 aa4.83□□□□□ -1.64
LIG3-205ENST00000585941 KRTAP4-6Q9BYQ5 205 aa4.83□□□□□ -1.64
LIG3-205ENST00000585941 MT1MQ8N339 61 aa4.78□□□□□ -1.64
LIG3-205ENST00000585941 KRTAP9-6A8MVA2 160 aa4.77□□□□□ -1.65
LIG3-205ENST00000585941 KRTAP5-9P26371 169 aa4.77□□□□□ -1.65
LIG3-205ENST00000585941 LCE5AQ5TCM9 118 aa4.76□□□□□ -1.65
LIG3-205ENST00000585941 MUC12Q9UKN1 5478 aa4.72□□□□□ -1.65
LIG3-205ENST00000585941 KRTAP4-3Q9BYR4 195 aa4.65□□□□□ -1.66
LIG3-205ENST00000585941 NEBP20929 6669 aa4.63□□□□□ -1.67
LIG3-205ENST00000585941 LCE1AQ5T7P2 110 aa4.62□□□□□ -1.67
LIG3-205ENST00000585941 KRTAP20-1Q3LI63 56 aa4.58□□□□□ -1.68
LIG3-205ENST00000585941 SPRR2EP22531 72 aa4.57□□□□□ -1.68
LIG3-205ENST00000585941 SPRR2BP35325 72 aa4.57□□□□□ -1.68
LIG3-205ENST00000585941 SPRR2AP35326 72 aa4.57□□□□□ -1.68
LIG3-205ENST00000585941 KRTAP2-3P0C7H8 128 aa4.54□□□□□ -1.68
LIG3-205ENST00000585941 KRTAP2-4Q9BYR9 128 aa4.54□□□□□ -1.68
LIG3-205ENST00000585941 KRTAP2-1Q9BYU5 128 aa4.54□□□□□ -1.68
LIG3-205ENST00000585941 MDN1Q9NU22 5596 aa4.47□□□□□ -1.69
LIG3-205ENST00000585941 DSTQ03001 7570 aaKnown RBP4.4□□□□□ -1.7
LIG3-205ENST00000585941 SPRR2DP22532 72 aa4.4□□□□□ -1.71
LIG3-205ENST00000585941 INE1O15225 51 aa4.38□□□□□ -1.71
LIG3-205ENST00000585941 KRTAP5-5Q701N2 237 aaPredicted RBP4.29□□□□□ -1.72
LIG3-205ENST00000585941 KRTAP2-2Q9BYT5 123 aa4.29□□□□□ -1.72
LIG3-205ENST00000585941 MT1AP04731 61 aa4.29□□□□□ -1.72
LIG3-205ENST00000585941 KRTAP6-1Q3LI64 71 aa4.21□□□□□ -1.74
LIG3-205ENST00000585941 LCE3BQ5TA77 95 aa4.2□□□□□ -1.74
LIG3-205ENST00000585941 KRTAP4-12Q9BQ66 201 aa4.08□□□□□ -1.76
LIG3-205ENST00000585941 KRTAP9-4Q9BYQ2 154 aa4.05□□□□□ -1.76
LIG3-205ENST00000585941 KRTAP9-9Q9BYP9 154 aa4.04□□□□□ -1.76
LIG3-205ENST00000585941 KRTAP5-4Q6L8H1 288 aa4.03□□□□□ -1.76
LIG3-205ENST00000585941 SYNE1Q8NF91 8797 aaKnown RBP4□□□□□ -1.77
LIG3-205ENST00000585941 KRTAP12-4P60329 112 aa3.98□□□□□ -1.77
LIG3-205ENST00000585941 LCE4AQ5TA78 99 aa3.94□□□□□ -1.78
LIG3-205ENST00000585941 KRTAP4-9Q9BYQ8 210 aa3.89□□□□□ -1.79
LIG3-205ENST00000585941 MT3P25713 68 aa3.88□□□□□ -1.79
LIG3-205ENST00000585941 LCE3DQ9BYE3 92 aa3.87□□□□□ -1.79
LIG3-205ENST00000585941 KRTAP6-2Q3LI66 62 aa3.85□□□□□ -1.79
LIG3-205ENST00000585941 LCE1DQ5T752 114 aa3.85□□□□□ -1.79
LIG3-205ENST00000585941 GPR98Q8WXG9 6306 aa3.81□□□□□ -1.8
LIG3-205ENST00000585941 MT4P47944 62 aa3.78□□□□□ -1.8
LIG3-205ENST00000585941 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
LIG3-205ENST00000585941 KRTAP20-2Q3LI61 65 aa3.75□□□□□ -1.81
LIG3-205ENST00000585941 KRTAP4-2Q9BYR5 136 aa3.73□□□□□ -1.81
LIG3-205ENST00000585941 HMCN1Q96RW7 5635 aa3.69□□□□□ -1.82
LIG3-205ENST00000585941 KRTAP5-2Q701N4 177 aa3.68□□□□□ -1.82
LIG3-205ENST00000585941 KRTAP5-3Q6L8H2 238 aa3.6□□□□□ -1.83
LIG3-205ENST00000585941 KRTAP4-11Q9BYQ6 195 aa3.59□□□□□ -1.83
LIG3-205ENST00000585941 KRTAP5-10Q6L8G5 202 aa3.59□□□□□ -1.84
LIG3-205ENST00000585941 AHNAK2Q8IVF2 5795 aa3.56□□□□□ -1.84
LIG3-205ENST00000585941 OBSCNQ5VST9 7968 aa3.53□□□□□ -1.84
LIG3-205ENST00000585941 KRTAP5-7Q6L8G8 165 aa3.47□□□□□ -1.85
LIG3-205ENST00000585941 PRM1P04553 51 aa3.35□□□□□ -1.87
LIG3-205ENST00000585941 LCE1EQ5T753 118 aa3.35□□□□□ -1.87
LIG3-205ENST00000585941 KRTAP5-1Q6L8H4 278 aa3.14□□□□□ -1.91
LIG3-205ENST00000585941 KRTAP5-8O75690 187 aa3.11□□□□□ -1.91
LIG3-205ENST00000585941 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
LIG3-205ENST00000585941 LCE1BQ5T7P3 118 aa3.11□□□□□ -1.91
LIG3-205ENST00000585941 MUC5ACP98088 5654 aa3.08□□□□□ -1.92
LIG3-205ENST00000585941 MUC5BQ9HC84 5762 aaPredicted RBP2.96□□□□□ -1.94
LIG3-205ENST00000585941 AHNAKQ09666 5890 aaKnown RBP2.93□□□□□ -1.94
LIG3-205ENST00000585941 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.93□□□□□ -1.94
LIG3-205ENST00000585941 KRTAP21-2Q3LI59 83 aa2.76□□□□□ -1.97
LIG3-205ENST00000585941 KRTAP5-11Q6L8G4 156 aa2.73□□□□□ -1.97
LIG3-205ENST00000585941 LCE1FQ5T754 118 aa2.44□□□□□ -2.02
LIG3-205ENST00000585941 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.03
LIG3-205ENST00000585941 PHGR1C9JFL3 82 aa2.33□□□□□ -2.04
LIG3-205ENST00000585941 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
LIG3-205ENST00000585941 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
LIG3-205ENST00000585941 MUC16Q8WXI7 14507 aa1.51□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 105.4 ms