RNA–Protein interactions for RNA: ENST00000583649.1

CASC3-208, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 3

Gene CASC3, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-208ENST00000583649 FAM240AA0A1B0GVK7 77 aa3.58□□□□□ -1.84
CASC3-208ENST00000583649 LCE3AQ5TA76 89 aa3.57□□□□□ -1.84
CASC3-208ENST00000583649 SYNE1Q8NF91 8797 aaKnown RBP3.56□□□□□ -1.84
CASC3-208ENST00000583649 TNP1P09430 55 aa3.55□□□□□ -1.84
CASC3-208ENST00000583649 COL5A1-AS1Q5SY13 56 aa3.55□□□□□ -1.84
CASC3-208ENST00000583649 SCGB1A1P11684 91 aa3.54□□□□□ -1.84
CASC3-208ENST00000583649 PCP4L1A6NKN8 68 aa3.53□□□□□ -1.84
CASC3-208ENST00000583649 LINC00643Q86TS7 51 aa3.53□□□□□ -1.84
CASC3-208ENST00000583649 SEC61GP60059 68 aa3.52□□□□□ -1.85
CASC3-208ENST00000583649 SERP1Q9Y6X1 66 aa3.5□□□□□ -1.85
CASC3-208ENST00000583649 KRTAP12-3P60328 96 aa3.49□□□□□ -1.85
CASC3-208ENST00000583649 PRAC1Q96KF2 57 aa3.48□□□□□ -1.85
CASC3-208ENST00000583649 KRTAP5-2Q701N4 177 aa3.46□□□□□ -1.86
CASC3-208ENST00000583649 KRTAP12-1P59990 96 aa3.44□□□□□ -1.86
CASC3-208ENST00000583649 SPATA8Q6RVD6 105 aa3.43□□□□□ -1.86
CASC3-208ENST00000583649 OBSCNQ5VST9 7968 aa3.43□□□□□ -1.86
CASC3-208ENST00000583649 A0A1B0GU33 70 aa3.39□□□□□ -1.87
CASC3-208ENST00000583649 SMIM26A0A096LP01 95 aa3.36□□□□□ -1.87
CASC3-208ENST00000583649 MT1AP04731 61 aa3.3□□□□□ -1.88
CASC3-208ENST00000583649 SMIM20Q8N5G0 67 aa3.29□□□□□ -1.88
CASC3-208ENST00000583649 SPANXA2-OT1Q8N9U9 137 aa3.29□□□□□ -1.88
CASC3-208ENST00000583649 KRTAP6-1Q3LI64 71 aa3.26□□□□□ -1.89
CASC3-208ENST00000583649 KRTAP6-2Q3LI66 62 aa3.26□□□□□ -1.89
CASC3-208ENST00000583649 KRTAP25-1Q3LHN0 102 aa3.22□□□□□ -1.89
CASC3-208ENST00000583649 SERP2Q8N6R1 65 aa3.22□□□□□ -1.89
CASC3-208ENST00000583649 KRTAP5-1Q6L8H4 278 aa3.2□□□□□ -1.9
CASC3-208ENST00000583649 COA5Q86WW8 74 aa3.2□□□□□ -1.9
CASC3-208ENST00000583649 SNURFQ9Y675 71 aa3.2□□□□□ -1.9
CASC3-208ENST00000583649 NDUFAF8A1L188 74 aa3.19□□□□□ -1.9
CASC3-208ENST00000583649 A8MU10 97 aa3.17□□□□□ -1.9
CASC3-208ENST00000583649 KRTAP4-2Q9BYR5 136 aa3.17□□□□□ -1.9
CASC3-208ENST00000583649 J3QR89 54 aa3.15□□□□□ -1.91
CASC3-208ENST00000583649 LCE3CQ5T5A8 94 aa3.15□□□□□ -1.91
CASC3-208ENST00000583649 A0A1B0GU69 56 aa3.14□□□□□ -1.91
CASC3-208ENST00000583649 MT3P25713 68 aa3.1□□□□□ -1.91
CASC3-208ENST00000583649 LOC105371267A0A1B0GV96 52 aa3.07□□□□□ -1.92
CASC3-208ENST00000583649 PRR15LQ9BU68 103 aa3.01□□□□□ -1.93
CASC3-208ENST00000583649 H7BZZ5 65 aa2.98□□□□□ -1.93
CASC3-208ENST00000583649 V9GYY9 64 aa2.98□□□□□ -1.93
CASC3-208ENST00000583649 LCE1EQ5T753 118 aa2.96□□□□□ -1.94
CASC3-208ENST00000583649 KRTAP9-6A8MVA2 160 aa2.85□□□□□ -1.95
CASC3-208ENST00000583649 K7ERS5 55 aa2.84□□□□□ -1.95
CASC3-208ENST00000583649 A0A1B0GV90 55 aa2.82□□□□□ -1.96
CASC3-208ENST00000583649 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
CASC3-208ENST00000583649 UQCR11O14957 56 aa2.79□□□□□ -1.96
CASC3-208ENST00000583649 PSPHP1O15172 72 aa2.79□□□□□ -1.96
CASC3-208ENST00000583649 RPS28P62857 69 aaKnown RBP2.75□□□□□ -1.97
CASC3-208ENST00000583649 PRO0628Q9UI54 55 aa2.75□□□□□ -1.97
CASC3-208ENST00000583649 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
CASC3-208ENST00000583649 K7ERU9 68 aa2.71□□□□□ -1.98
CASC3-208ENST00000583649 COX7CP15954 63 aa2.66□□□□□ -1.98
CASC3-208ENST00000583649 LCE1FQ5T754 118 aa2.66□□□□□ -1.98
CASC3-208ENST00000583649 ANAPC13Q9BS18 74 aa2.66□□□□□ -1.98
CASC3-208ENST00000583649 MIR22HGQ0VDD5 57 aa2.65□□□□□ -1.99
CASC3-208ENST00000583649 LINC01558Q9Y6Z2 57 aa2.65□□□□□ -1.99
CASC3-208ENST00000583649 LUZP6Q538Z0 58 aa2.63□□□□□ -1.99
CASC3-208ENST00000583649 PHGR1C9JFL3 82 aa2.61□□□□□ -1.99
CASC3-208ENST00000583649 KRTAP5-11Q6L8G4 156 aa2.59□□□□□ -1.99
CASC3-208ENST00000583649 CDC42SE1Q9NRR8 79 aa2.53□□□□□ -2
CASC3-208ENST00000583649 ATP5EP56381 51 aaPredicted RBP2.49□□□□□ -2.01
CASC3-208ENST00000583649 A6NED7 52 aa2.45□□□□□ -2.02
CASC3-208ENST00000583649 ROMO1P60602 79 aa2.41□□□□□ -2.02
CASC3-208ENST00000583649 Q1T7F1 81 aa2.41□□□□□ -2.02
CASC3-208ENST00000583649 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.4□□□□□ -2.03
CASC3-208ENST00000583649 PMAIP1Q13794 54 aa2.38□□□□□ -2.03
CASC3-208ENST00000583649 LCE3EQ5T5B0 92 aa2.26□□□□□ -2.05
CASC3-208ENST00000583649 LCE3DQ9BYE3 92 aa2.2□□□□□ -2.06
CASC3-208ENST00000583649 CCDC179H3BU77 68 aa2.19□□□□□ -2.06
CASC3-208ENST00000583649 TMEM258P61165 79 aa2.18□□□□□ -2.06
CASC3-208ENST00000583649 KRTAP21-2Q3LI59 83 aa2.14□□□□□ -2.07
CASC3-208ENST00000583649 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
CASC3-208ENST00000583649 KTN1-AS1Q86SY8 53 aa2.08□□□□□ -2.08
CASC3-208ENST00000583649 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
CASC3-208ENST00000583649 KRTAP21-1Q3LI58 79 aa2.02□□□□□ -2.09
CASC3-208ENST00000583649 BRK1Q8WUW1 75 aa1.81□□□□□ -2.12
CASC3-208ENST00000583649 INE1O15225 51 aa1.65□□□□□ -2.15
CASC3-208ENST00000583649 MUC16Q8WXI7 14507 aa1.45□□□□□ -2.18
CASC3-208ENST00000583649 PRM1P04553 51 aa1.16□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 65.1 ms