RNA–Protein interactions for RNA: ENST00000581707.1

SREBF1-220, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 695 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-220ENST00000581707 KRTAP4-9Q9BYQ8 210 aa6.83□□□□□ -1.32
SREBF1-220ENST00000581707 KRTAP12-3P60328 96 aa6.75□□□□□ -1.33
SREBF1-220ENST00000581707 KRTAP4-3Q9BYR4 195 aa6.74□□□□□ -1.33
SREBF1-220ENST00000581707 V9GYY9 64 aa6.74□□□□□ -1.33
SREBF1-220ENST00000581707 PSPHP1O15172 72 aa6.71□□□□□ -1.34
SREBF1-220ENST00000581707 K7ERS5 55 aa6.7□□□□□ -1.34
SREBF1-220ENST00000581707 Q1T7F1 81 aa6.69□□□□□ -1.34
SREBF1-220ENST00000581707 KRTAP25-1Q3LHN0 102 aa6.68□□□□□ -1.34
SREBF1-220ENST00000581707 LCE4AQ5TA78 99 aa6.68□□□□□ -1.34
SREBF1-220ENST00000581707 LCE1DQ5T752 114 aa6.67□□□□□ -1.34
SREBF1-220ENST00000581707 MT4P47944 62 aa6.61□□□□□ -1.35
SREBF1-220ENST00000581707 KRTAP4-7Q9BYR0 210 aa6.61□□□□□ -1.35
SREBF1-220ENST00000581707 KRTAP5-4Q6L8H1 288 aa6.56□□□□□ -1.36
SREBF1-220ENST00000581707 GPR98Q8WXG9 6306 aa6.55□□□□□ -1.36
SREBF1-220ENST00000581707 HMCN1Q96RW7 5635 aa6.52□□□□□ -1.37
SREBF1-220ENST00000581707 A6NED7 52 aa6.48□□□□□ -1.37
SREBF1-220ENST00000581707 KRTAP23-1A1A580 65 aa6.43□□□□□ -1.38
SREBF1-220ENST00000581707 KRTAP4-6Q9BYQ5 205 aa6.42□□□□□ -1.38
SREBF1-220ENST00000581707 KRTAP19-4Q3LI73 84 aa6.37□□□□□ -1.39
SREBF1-220ENST00000581707 RPS28P62857 69 aaKnown RBP6.35□□□□□ -1.39
SREBF1-220ENST00000581707 CDC42SE1Q9NRR8 79 aa6.34□□□□□ -1.39
SREBF1-220ENST00000581707 KRTAP15-1Q3LI76 137 aa6.32□□□□□ -1.4
SREBF1-220ENST00000581707 KRTAP5-5Q701N2 237 aaPredicted RBP6.32□□□□□ -1.4
SREBF1-220ENST00000581707 LOC100996750A0A140TA64 210 aa6.26□□□□□ -1.41
SREBF1-220ENST00000581707 AHNAK2Q8IVF2 5795 aa6.25□□□□□ -1.41
SREBF1-220ENST00000581707 PCP4P48539 62 aa6.24□□□□□ -1.41
SREBF1-220ENST00000581707 ROMO1P60602 79 aa6.24□□□□□ -1.41
SREBF1-220ENST00000581707 LCE3CQ5T5A8 94 aa6.22□□□□□ -1.41
SREBF1-220ENST00000581707 KRTAP20-2Q3LI61 65 aa6.19□□□□□ -1.42
SREBF1-220ENST00000581707 KRTAP12-4P60329 112 aa6.18□□□□□ -1.42
SREBF1-220ENST00000581707 SPRR5A0A1B0GTR4 108 aa6.17□□□□□ -1.42
SREBF1-220ENST00000581707 KRTAP5-10Q6L8G5 202 aa6.16□□□□□ -1.42
SREBF1-220ENST00000581707 KRTAP5-3Q6L8H2 238 aa6.05□□□□□ -1.44
SREBF1-220ENST00000581707 SYNE1Q8NF91 8797 aaKnown RBP6.04□□□□□ -1.44
SREBF1-220ENST00000581707 KRTAP5-7Q6L8G8 165 aa5.93□□□□□ -1.46
SREBF1-220ENST00000581707 MT1AP04731 61 aa5.9□□□□□ -1.46
SREBF1-220ENST00000581707 KRTAP6-1Q3LI64 71 aa5.87□□□□□ -1.47
SREBF1-220ENST00000581707 KRTAP9-6A8MVA2 160 aa5.86□□□□□ -1.47
SREBF1-220ENST00000581707 KRTAP5-2Q701N4 177 aa5.75□□□□□ -1.49
SREBF1-220ENST00000581707 KRTAP9-4Q9BYQ2 154 aa5.71□□□□□ -1.5
SREBF1-220ENST00000581707 KRTAP4-11Q9BYQ6 195 aa5.65□□□□□ -1.5
SREBF1-220ENST00000581707 KRTAP6-2Q3LI66 62 aa5.61□□□□□ -1.51
SREBF1-220ENST00000581707 BRK1Q8WUW1 75 aa5.56□□□□□ -1.52
SREBF1-220ENST00000581707 KRTAP5-8O75690 187 aa5.45□□□□□ -1.54
SREBF1-220ENST00000581707 MT3P25713 68 aa5.41□□□□□ -1.54
SREBF1-220ENST00000581707 OBSCNQ5VST9 7968 aa5.4□□□□□ -1.55
SREBF1-220ENST00000581707 SVIPQ8NHG7 77 aa5.34□□□□□ -1.55
SREBF1-220ENST00000581707 PMAIP1Q13794 54 aa5.24□□□□□ -1.57
SREBF1-220ENST00000581707 KRTAP9-9Q9BYP9 154 aa5.18□□□□□ -1.58
SREBF1-220ENST00000581707 KRTAP5-1Q6L8H4 278 aa5.15□□□□□ -1.59
SREBF1-220ENST00000581707 MUC5ACP98088 5654 aa5.14□□□□□ -1.59
SREBF1-220ENST00000581707 MUC5BQ9HC84 5762 aaPredicted RBP5.14□□□□□ -1.59
SREBF1-220ENST00000581707 AHNAKQ09666 5890 aaKnown RBP5.11□□□□□ -1.59
SREBF1-220ENST00000581707 PRAC1Q96KF2 57 aa5.04□□□□□ -1.6
SREBF1-220ENST00000581707 LCE1EQ5T753 118 aa4.96□□□□□ -1.62
SREBF1-220ENST00000581707 PRO0628Q9UI54 55 aa4.93□□□□□ -1.62
SREBF1-220ENST00000581707 LCE1BQ5T7P3 118 aa4.67□□□□□ -1.66
SREBF1-220ENST00000581707 KRTAP4-2Q9BYR5 136 aa4.67□□□□□ -1.66
SREBF1-220ENST00000581707 LCE1CQ5T751 118 aa4.6□□□□□ -1.67
SREBF1-220ENST00000581707 KTN1-AS1Q86SY8 53 aa4.6□□□□□ -1.67
SREBF1-220ENST00000581707 LCE3DQ9BYE3 92 aa4.49□□□□□ -1.69
SREBF1-220ENST00000581707 LUZP6Q538Z0 58 aa4.28□□□□□ -1.72
SREBF1-220ENST00000581707 KRTAP4-12Q9BQ66 201 aa4.24□□□□□ -1.73
SREBF1-220ENST00000581707 LCE3EQ5T5B0 92 aa4.23□□□□□ -1.73
SREBF1-220ENST00000581707 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.18□□□□□ -1.74
SREBF1-220ENST00000581707 KRTAP5-11Q6L8G4 156 aa4.15□□□□□ -1.75
SREBF1-220ENST00000581707 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
SREBF1-220ENST00000581707 KRTAP21-2Q3LI59 83 aa3.86□□□□□ -1.79
SREBF1-220ENST00000581707 H3BS24 57 aa3.68□□□□□ -1.82
SREBF1-220ENST00000581707 PHGR1C9JFL3 82 aa3.6□□□□□ -1.83
SREBF1-220ENST00000581707 KRTAP4-4Q9BYR3 166 aa3.55□□□□□ -1.84
SREBF1-220ENST00000581707 NDUFAF8A1L188 74 aa3.54□□□□□ -1.84
SREBF1-220ENST00000581707 MUC19Q7Z5P9 8384 aa3.31□□□□□ -1.88
SREBF1-220ENST00000581707 A0A0A0MQY5 61 aa3.25□□□□□ -1.89
SREBF1-220ENST00000581707 PRM1P04553 51 aa3.19□□□□□ -1.9
SREBF1-220ENST00000581707 INE1O15225 51 aa3.01□□□□□ -1.93
SREBF1-220ENST00000581707 KRTAP21-1Q3LI58 79 aa2.73□□□□□ -1.97
SREBF1-220ENST00000581707 MUC16Q8WXI7 14507 aa2.41□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 113.5 ms