RNA–Protein interactions for RNA: ENST00000578067.5

LIMD2-203, Transcript of LIM domain containing 2, humanhuman

TSL 1 (best)

Gene LIMD2, Length 2,019 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-203ENST00000578067 KRTAP19-3Q7Z4W3 81 aa9.46□□□□□ -0.9
LIMD2-203ENST00000578067 SPRR2FQ96RM1 72 aa9.46□□□□□ -0.9
LIMD2-203ENST00000578067 MACF1Q9UPN3 7388 aaKnown RBP9.45□□□□□ -0.9
LIMD2-203ENST00000578067 KRTAP9-6A8MVA2 160 aa9.42□□□□□ -0.9
LIMD2-203ENST00000578067 MT1GP13640 62 aa9.4□□□□□ -0.9
LIMD2-203ENST00000578067 MUC12Q9UKN1 5478 aa9.34□□□□□ -0.91
LIMD2-203ENST00000578067 MT1MQ8N339 61 aa9.32□□□□□ -0.92
LIMD2-203ENST00000578067 LCE5AQ5TCM9 118 aa9.24□□□□□ -0.93
LIMD2-203ENST00000578067 KRTAP4-3Q9BYR4 195 aa9.21□□□□□ -0.93
LIMD2-203ENST00000578067 KRTAP5-9P26371 169 aa9.19□□□□□ -0.94
LIMD2-203ENST00000578067 SYNE2Q8WXH0 6885 aaKnown RBP9.11□□□□□ -0.95
LIMD2-203ENST00000578067 LOC100996750A0A140TA64 210 aa8.98□□□□□ -0.97
LIMD2-203ENST00000578067 LCE1AQ5T7P2 110 aa8.98□□□□□ -0.97
LIMD2-203ENST00000578067 KRTAP9-6A0A140TA67 174 aa8.97□□□□□ -0.97
LIMD2-203ENST00000578067 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.92□□□□□ -0.98
LIMD2-203ENST00000578067 INE1O15225 51 aa8.87□□□□□ -0.99
LIMD2-203ENST00000578067 SPRR2EP22531 72 aa8.87□□□□□ -0.99
LIMD2-203ENST00000578067 SPRR2BP35325 72 aa8.87□□□□□ -0.99
LIMD2-203ENST00000578067 SPRR2AP35326 72 aa8.87□□□□□ -0.99
LIMD2-203ENST00000578067 KRTAP2-3P0C7H8 128 aa8.85□□□□□ -0.99
LIMD2-203ENST00000578067 KRTAP2-4Q9BYR9 128 aa8.85□□□□□ -0.99
LIMD2-203ENST00000578067 KRTAP2-1Q9BYU5 128 aa8.85□□□□□ -0.99
LIMD2-203ENST00000578067 KRTAP6-3Q3LI67 103 aa8.84□□□□□ -0.99
LIMD2-203ENST00000578067 MDN1Q9NU22 5596 aa8.81□□□□□ -1
LIMD2-203ENST00000578067 DSTQ03001 7570 aaKnown RBP8.67□□□□□ -1.02
LIMD2-203ENST00000578067 SPRR2DP22532 72 aa8.53□□□□□ -1.04
LIMD2-203ENST00000578067 KRTAP5-5Q701N2 237 aaPredicted RBP8.36□□□□□ -1.07
LIMD2-203ENST00000578067 MT1AP04731 61 aa8.3□□□□□ -1.08
LIMD2-203ENST00000578067 KRTAP9-7A8MTY7 169 aa8.29□□□□□ -1.08
LIMD2-203ENST00000578067 KRTAP6-1Q3LI64 71 aa8.26□□□□□ -1.09
LIMD2-203ENST00000578067 LCE3BQ5TA77 95 aa8.15□□□□□ -1.11
LIMD2-203ENST00000578067 NEBP20929 6669 aa8.11□□□□□ -1.11
LIMD2-203ENST00000578067 SYNE1Q8NF91 8797 aaKnown RBP7.9□□□□□ -1.14
LIMD2-203ENST00000578067 KRTAP9-4Q9BYQ2 154 aa7.87□□□□□ -1.15
LIMD2-203ENST00000578067 KRTAP5-4Q6L8H1 288 aa7.78□□□□□ -1.16
LIMD2-203ENST00000578067 KRTAP4-9Q9BYQ8 210 aa7.76□□□□□ -1.17
LIMD2-203ENST00000578067 KRTAP12-4P60329 112 aa7.66□□□□□ -1.18
LIMD2-203ENST00000578067 KRTAP6-2Q3LI66 62 aa7.54□□□□□ -1.2
LIMD2-203ENST00000578067 LCE4AQ5TA78 99 aa7.53□□□□□ -1.2
LIMD2-203ENST00000578067 LCE3DQ9BYE3 92 aa7.51□□□□□ -1.21
LIMD2-203ENST00000578067 KRTAP2-2Q9BYT5 123 aa7.51□□□□□ -1.21
LIMD2-203ENST00000578067 MT3P25713 68 aa7.51□□□□□ -1.21
LIMD2-203ENST00000578067 MT4P47944 62 aa7.42□□□□□ -1.22
LIMD2-203ENST00000578067 KRTAP4-6Q9BYQ5 205 aa7.41□□□□□ -1.22
LIMD2-203ENST00000578067 KRTAP20-1Q3LI63 56 aa7.38□□□□□ -1.23
LIMD2-203ENST00000578067 LCE3EQ5T5B0 92 aa7.35□□□□□ -1.23
LIMD2-203ENST00000578067 KRTAP20-2Q3LI61 65 aa7.27□□□□□ -1.25
LIMD2-203ENST00000578067 LCE1DQ5T752 114 aa7.2□□□□□ -1.26
LIMD2-203ENST00000578067 KRTAP5-2Q701N4 177 aa7.12□□□□□ -1.27
LIMD2-203ENST00000578067 HMCN1Q96RW7 5635 aa7.07□□□□□ -1.28
LIMD2-203ENST00000578067 KRTAP5-3Q6L8H2 238 aa6.98□□□□□ -1.29
LIMD2-203ENST00000578067 OBSCNQ5VST9 7968 aa6.84□□□□□ -1.31
LIMD2-203ENST00000578067 PRM1P04553 51 aa6.6□□□□□ -1.35
LIMD2-203ENST00000578067 LCE1EQ5T753 118 aa6.4□□□□□ -1.39
LIMD2-203ENST00000578067 KRTAP4-11Q9BYQ6 195 aa6.2□□□□□ -1.42
LIMD2-203ENST00000578067 KRTAP5-1Q6L8H4 278 aa6.11□□□□□ -1.43
LIMD2-203ENST00000578067 LCE1BQ5T7P3 118 aa6.08□□□□□ -1.44
LIMD2-203ENST00000578067 MUC5ACP98088 5654 aa6.05□□□□□ -1.44
LIMD2-203ENST00000578067 KRTAP5-10Q6L8G5 202 aa6.04□□□□□ -1.44
LIMD2-203ENST00000578067 AHNAK2Q8IVF2 5795 aa6.04□□□□□ -1.44
LIMD2-203ENST00000578067 LCE1CQ5T751 118 aa5.98□□□□□ -1.45
LIMD2-203ENST00000578067 KRTAP4-2Q9BYR5 136 aa5.98□□□□□ -1.45
LIMD2-203ENST00000578067 KRTAP5-8O75690 187 aa5.96□□□□□ -1.45
LIMD2-203ENST00000578067 KRTAP5-7Q6L8G8 165 aa5.83□□□□□ -1.48
LIMD2-203ENST00000578067 GPR98Q8WXG9 6306 aa5.63□□□□□ -1.51
LIMD2-203ENST00000578067 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.62□□□□□ -1.51
LIMD2-203ENST00000578067 KRTAP21-2Q3LI59 83 aa5.39□□□□□ -1.55
LIMD2-203ENST00000578067 KRTAP9-9Q9BYP9 154 aa5.27□□□□□ -1.57
LIMD2-203ENST00000578067 KRTAP5-11Q6L8G4 156 aa5.23□□□□□ -1.57
LIMD2-203ENST00000578067 MUC5BQ9HC84 5762 aaPredicted RBP5.03□□□□□ -1.6
LIMD2-203ENST00000578067 KRTAP4-12Q9BQ66 201 aa4.9□□□□□ -1.63
LIMD2-203ENST00000578067 KRTAP4-4Q9BYR3 166 aa4.81□□□□□ -1.64
LIMD2-203ENST00000578067 LCE1FQ5T754 118 aa4.58□□□□□ -1.68
LIMD2-203ENST00000578067 AHNAKQ09666 5890 aaKnown RBP4.52□□□□□ -1.69
LIMD2-203ENST00000578067 PHGR1C9JFL3 82 aa4.5□□□□□ -1.69
LIMD2-203ENST00000578067 KRTAP21-1Q3LI58 79 aa4.09□□□□□ -1.75
LIMD2-203ENST00000578067 MUC19Q7Z5P9 8384 aa4.04□□□□□ -1.76
LIMD2-203ENST00000578067 MUC16Q8WXI7 14507 aa2.94□□□□□ -1.94
Retrieved 78 of 20,778 RNA–protein pairs in 38 ms