RNA–Protein interactions for RNA: ENST00000574897.5

NPLOC4-217, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2

Gene NPLOC4, Length 2,365 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-217ENST00000574897 KRTAP4-3Q9BYR4 195 aa7.98□□□□□ -1.13
NPLOC4-217ENST00000574897 MACF1Q9UPN3 7388 aaKnown RBP7.95□□□□□ -1.14
NPLOC4-217ENST00000574897 KRTAP19-3Q7Z4W3 81 aa7.91□□□□□ -1.14
NPLOC4-217ENST00000574897 KRTAP9-2Q9BYQ4 174 aa7.91□□□□□ -1.14
NPLOC4-217ENST00000574897 MT1MQ8N339 61 aa7.87□□□□□ -1.15
NPLOC4-217ENST00000574897 SPRR2FQ96RM1 72 aa7.87□□□□□ -1.15
NPLOC4-217ENST00000574897 LOC100996750A0A140TA64 210 aa7.83□□□□□ -1.16
NPLOC4-217ENST00000574897 MT1GP13640 62 aa7.83□□□□□ -1.16
NPLOC4-217ENST00000574897 SYNE2Q8WXH0 6885 aaKnown RBP7.74□□□□□ -1.17
NPLOC4-217ENST00000574897 KRTAP2-3P0C7H8 128 aa7.71□□□□□ -1.17
NPLOC4-217ENST00000574897 KRTAP2-4Q9BYR9 128 aa7.71□□□□□ -1.17
NPLOC4-217ENST00000574897 KRTAP2-1Q9BYU5 128 aa7.71□□□□□ -1.17
NPLOC4-217ENST00000574897 LCE5AQ5TCM9 118 aa7.71□□□□□ -1.18
NPLOC4-217ENST00000574897 CRCT1Q9UGL9 99 aa7.69□□□□□ -1.18
NPLOC4-217ENST00000574897 DSTQ03001 7570 aaKnown RBP7.67□□□□□ -1.18
NPLOC4-217ENST00000574897 INE1O15225 51 aa7.54□□□□□ -1.2
NPLOC4-217ENST00000574897 MDN1Q9NU22 5596 aa7.52□□□□□ -1.21
NPLOC4-217ENST00000574897 KRTAP5-9P26371 169 aa7.44□□□□□ -1.22
NPLOC4-217ENST00000574897 LCE1AQ5T7P2 110 aa7.4□□□□□ -1.22
NPLOC4-217ENST00000574897 SPRR2EP22531 72 aa7.27□□□□□ -1.24
NPLOC4-217ENST00000574897 SPRR2BP35325 72 aa7.27□□□□□ -1.24
NPLOC4-217ENST00000574897 SPRR2AP35326 72 aa7.27□□□□□ -1.24
NPLOC4-217ENST00000574897 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.11□□□□□ -1.27
NPLOC4-217ENST00000574897 KRTAP6-1Q3LI64 71 aa7.08□□□□□ -1.28
NPLOC4-217ENST00000574897 LCE3BQ5TA77 95 aa7.07□□□□□ -1.28
NPLOC4-217ENST00000574897 KRTAP6-3Q3LI67 103 aa7.01□□□□□ -1.29
NPLOC4-217ENST00000574897 KRTAP5-5Q701N2 237 aaPredicted RBP7□□□□□ -1.29
NPLOC4-217ENST00000574897 KRTAP9-6A0A140TA67 174 aa6.98□□□□□ -1.29
NPLOC4-217ENST00000574897 MT1AP04731 61 aa6.98□□□□□ -1.29
NPLOC4-217ENST00000574897 SPRR2DP22532 72 aa6.97□□□□□ -1.29
NPLOC4-217ENST00000574897 SYNE1Q8NF91 8797 aaKnown RBP6.97□□□□□ -1.29
NPLOC4-217ENST00000574897 KRTAP4-9Q9BYQ8 210 aa6.89□□□□□ -1.31
NPLOC4-217ENST00000574897 KRTAP12-4P60329 112 aa6.74□□□□□ -1.33
NPLOC4-217ENST00000574897 KRTAP9-4Q9BYQ2 154 aa6.6□□□□□ -1.35
NPLOC4-217ENST00000574897 NEBP20929 6669 aa6.56□□□□□ -1.36
NPLOC4-217ENST00000574897 KRTAP9-7A8MTY7 169 aa6.51□□□□□ -1.37
NPLOC4-217ENST00000574897 LCE3DQ9BYE3 92 aa6.49□□□□□ -1.37
NPLOC4-217ENST00000574897 KRTAP6-2Q3LI66 62 aa6.42□□□□□ -1.38
NPLOC4-217ENST00000574897 LCE3EQ5T5B0 92 aa6.35□□□□□ -1.39
NPLOC4-217ENST00000574897 KRTAP5-4Q6L8H1 288 aa6.35□□□□□ -1.39
NPLOC4-217ENST00000574897 OBSCNQ5VST9 7968 aa6.28□□□□□ -1.4
NPLOC4-217ENST00000574897 MT3P25713 68 aa6.26□□□□□ -1.41
NPLOC4-217ENST00000574897 KRTAP4-6Q9BYQ5 205 aa6.2□□□□□ -1.42
NPLOC4-217ENST00000574897 MT4P47944 62 aa6.17□□□□□ -1.42
NPLOC4-217ENST00000574897 LCE4AQ5TA78 99 aa6.02□□□□□ -1.45
NPLOC4-217ENST00000574897 KRTAP20-2Q3LI61 65 aa5.99□□□□□ -1.45
NPLOC4-217ENST00000574897 PRM1P04553 51 aa5.93□□□□□ -1.46
NPLOC4-217ENST00000574897 KRTAP2-2Q9BYT5 123 aa5.92□□□□□ -1.46
NPLOC4-217ENST00000574897 HMCN1Q96RW7 5635 aa5.92□□□□□ -1.46
NPLOC4-217ENST00000574897 LCE1DQ5T752 114 aa5.89□□□□□ -1.47
NPLOC4-217ENST00000574897 KRTAP5-2Q701N4 177 aa5.86□□□□□ -1.47
NPLOC4-217ENST00000574897 KRTAP20-1Q3LI63 56 aa5.75□□□□□ -1.49
NPLOC4-217ENST00000574897 KRTAP5-3Q6L8H2 238 aa5.72□□□□□ -1.49
NPLOC4-217ENST00000574897 MUC5ACP98088 5654 aa5.29□□□□□ -1.56
NPLOC4-217ENST00000574897 LCE1EQ5T753 118 aa5.21□□□□□ -1.57
NPLOC4-217ENST00000574897 LCE1BQ5T7P3 118 aa5.18□□□□□ -1.58
NPLOC4-217ENST00000574897 KRTAP5-1Q6L8H4 278 aa5.06□□□□□ -1.6
NPLOC4-217ENST00000574897 KRTAP4-11Q9BYQ6 195 aa5.04□□□□□ -1.6
NPLOC4-217ENST00000574897 KRTAP4-2Q9BYR5 136 aa5.01□□□□□ -1.61
NPLOC4-217ENST00000574897 KRTAP5-10Q6L8G5 202 aa5□□□□□ -1.61
NPLOC4-217ENST00000574897 LCE1CQ5T751 118 aa4.93□□□□□ -1.62
NPLOC4-217ENST00000574897 AHNAK2Q8IVF2 5795 aa4.87□□□□□ -1.63
NPLOC4-217ENST00000574897 KRTAP5-8O75690 187 aa4.85□□□□□ -1.63
NPLOC4-217ENST00000574897 KRTAP5-7Q6L8G8 165 aa4.67□□□□□ -1.66
NPLOC4-217ENST00000574897 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.62□□□□□ -1.67
NPLOC4-217ENST00000574897 KRTAP21-2Q3LI59 83 aa4.58□□□□□ -1.68
NPLOC4-217ENST00000574897 MUC5BQ9HC84 5762 aaPredicted RBP4.32□□□□□ -1.72
NPLOC4-217ENST00000574897 KRTAP5-11Q6L8G4 156 aa4.28□□□□□ -1.72
NPLOC4-217ENST00000574897 KRTAP4-4Q9BYR3 166 aa4.23□□□□□ -1.73
NPLOC4-217ENST00000574897 GPR98Q8WXG9 6306 aa4.21□□□□□ -1.74
NPLOC4-217ENST00000574897 KRTAP4-12Q9BQ66 201 aa4.18□□□□□ -1.74
NPLOC4-217ENST00000574897 KRTAP9-9Q9BYP9 154 aa4.16□□□□□ -1.74
NPLOC4-217ENST00000574897 MUC19Q7Z5P9 8384 aa3.81□□□□□ -1.8
NPLOC4-217ENST00000574897 PHGR1C9JFL3 82 aa3.71□□□□□ -1.82
NPLOC4-217ENST00000574897 KRTAP21-1Q3LI58 79 aa3.63□□□□□ -1.83
NPLOC4-217ENST00000574897 LCE1FQ5T754 118 aa3.59□□□□□ -1.83
NPLOC4-217ENST00000574897 AHNAKQ09666 5890 aaKnown RBP3.42□□□□□ -1.86
NPLOC4-217ENST00000574897 MUC16Q8WXI7 14507 aa2.41□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 11.4 ms