RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 PKHD1L1Q86WI1 4243 aa1.14□□□□□ -2.23
NUP88-209ENST00000574855 FAT3Q8TDW7 4589 aa1.13□□□□□ -2.23
NUP88-209ENST00000574855 M0R2T5 61 aa1.13□□□□□ -2.23
NUP88-209ENST00000574855 TNP1P09430 55 aa1.12□□□□□ -2.23
NUP88-209ENST00000574855 TNXBP22105 4242 aa1.12□□□□□ -2.23
NUP88-209ENST00000574855 KIAA1109Q2LD37 5005 aa1.12□□□□□ -2.23
NUP88-209ENST00000574855 KMT2CQ8NEZ4 4911 aaKnown RBP1.12□□□□□ -2.23
NUP88-209ENST00000574855 LRP1Q07954 4544 aaKnown RBP1.11□□□□□ -2.23
NUP88-209ENST00000574855 HSPG2P98160 4391 aa1.11□□□□□ -2.23
NUP88-209ENST00000574855 KRTAP19-2Q3LHN2 52 aa1.11□□□□□ -2.23
NUP88-209ENST00000574855 RYR3Q15413 4870 aa1.1□□□□□ -2.23
NUP88-209ENST00000574855 SPRR2GQ9BYE4 73 aa1.08□□□□□ -2.24
NUP88-209ENST00000574855 MYCBP2O75592 4640 aa1.08□□□□□ -2.24
NUP88-209ENST00000574855 LRP2P98164 4655 aa1.06□□□□□ -2.24
NUP88-209ENST00000574855 MT1HP80294 61 aa1.06□□□□□ -2.24
NUP88-209ENST00000574855 EPPK1P58107 5090 aaKnown RBP1.05□□□□□ -2.24
NUP88-209ENST00000574855 BIRC6Q9NR09 4857 aa1.04□□□□□ -2.24
NUP88-209ENST00000574855 MT2AP02795 61 aa1.04□□□□□ -2.24
NUP88-209ENST00000574855 KRTAP19-8Q3LI54 63 aa1.04□□□□□ -2.24
NUP88-209ENST00000574855 ABCA13Q86UQ4 5058 aa1.04□□□□□ -2.24
NUP88-209ENST00000574855 LPAP08519 4548 aa1.03□□□□□ -2.24
NUP88-209ENST00000574855 MT1FP04733 61 aa1.03□□□□□ -2.24
NUP88-209ENST00000574855 HERC2O95714 4834 aa1.03□□□□□ -2.25
NUP88-209ENST00000574855 MUC17Q685J3 4493 aa1.02□□□□□ -2.25
NUP88-209ENST00000574855 MT1BP07438 61 aa0.99□□□□□ -2.25
NUP88-209ENST00000574855 KRTAP8-1Q8IUC2 63 aa0.99□□□□□ -2.25
NUP88-209ENST00000574855 HERC1Q15751 4861 aa0.99□□□□□ -2.25
NUP88-209ENST00000574855 MT1XP80297 61 aa0.98□□□□□ -2.25
NUP88-209ENST00000574855 FLGP20930 4061 aaPredicted RBP0.98□□□□□ -2.25
NUP88-209ENST00000574855 HMCN2Q8NDA2 5059 aa0.95□□□□□ -2.26
NUP88-209ENST00000574855 PCLOQ9Y6V0 5065 aa0.94□□□□□ -2.26
NUP88-209ENST00000574855 MUC2Q02817 5179 aa0.94□□□□□ -2.26
NUP88-209ENST00000574855 KRTAP19-5Q3LI72 72 aa0.92□□□□□ -2.26
NUP88-209ENST00000574855 RNF213Q63HN8 5207 aa0.92□□□□□ -2.26
NUP88-209ENST00000574855 FAT4Q6V0I7 4981 aa0.9□□□□□ -2.26
NUP88-209ENST00000574855 KRTAP19-6Q3LI70 58 aa0.89□□□□□ -2.27
NUP88-209ENST00000574855 UBR4Q5T4S7 5183 aa0.89□□□□□ -2.27
NUP88-209ENST00000574855 KRTAP19-7Q3SYF9 63 aa0.87□□□□□ -2.27
NUP88-209ENST00000574855 MT1EP04732 61 aa0.86□□□□□ -2.27
NUP88-209ENST00000574855 MT1LQ93083 61 aa0.86□□□□□ -2.27
NUP88-209ENST00000574855 MT1GP13640 62 aa0.84□□□□□ -2.27
NUP88-209ENST00000574855 KRTAP2-3P0C7H8 128 aa0.83□□□□□ -2.28
NUP88-209ENST00000574855 KRTAP19-3Q7Z4W3 81 aa0.83□□□□□ -2.28
NUP88-209ENST00000574855 KRTAP2-4Q9BYR9 128 aa0.83□□□□□ -2.28
NUP88-209ENST00000574855 KRTAP2-1Q9BYU5 128 aa0.83□□□□□ -2.28
NUP88-209ENST00000574855 MT1MQ8N339 61 aa0.8□□□□□ -2.28
NUP88-209ENST00000574855 SPRR2FQ96RM1 72 aa0.8□□□□□ -2.28
NUP88-209ENST00000574855 USH2AO75445 5202 aa0.8□□□□□ -2.28
NUP88-209ENST00000574855 PRM1P04553 51 aa0.76□□□□□ -2.29
NUP88-209ENST00000574855 MT1AP04731 61 aa0.75□□□□□ -2.29
NUP88-209ENST00000574855 SPRR2EP22531 72 aa0.75□□□□□ -2.29
NUP88-209ENST00000574855 SPRR2BP35325 72 aa0.75□□□□□ -2.29
NUP88-209ENST00000574855 SPRR2AP35326 72 aa0.75□□□□□ -2.29
NUP88-209ENST00000574855 KRTAP5-10Q6L8G5 202 aa0.75□□□□□ -2.29
NUP88-209ENST00000574855 SSPOA2VEC9 5147 aa0.75□□□□□ -2.29
NUP88-209ENST00000574855 KMT2DO14686 5537 aa0.74□□□□□ -2.29
NUP88-209ENST00000574855 SPRR2DP22532 72 aa0.72□□□□□ -2.29
NUP88-209ENST00000574855 MUC16Q8WXI7 14507 aa0.72□□□□□ -2.29
NUP88-209ENST00000574855 KRTAP6-1Q3LI64 71 aa0.71□□□□□ -2.3
NUP88-209ENST00000574855 AHNAK2Q8IVF2 5795 aa0.7□□□□□ -2.3
NUP88-209ENST00000574855 MUC12Q9UKN1 5478 aa0.66□□□□□ -2.3
NUP88-209ENST00000574855 KRTAP6-2Q3LI66 62 aa0.65□□□□□ -2.31
NUP88-209ENST00000574855 FSIP2Q5CZC0 6907 aa0.64□□□□□ -2.31
NUP88-209ENST00000574855 KRTAP21-1Q3LI58 79 aa0.62□□□□□ -2.31
NUP88-209ENST00000574855 MT4P47944 62 aa0.61□□□□□ -2.31
NUP88-209ENST00000574855 KRTAP20-2Q3LI61 65 aa0.6□□□□□ -2.31
NUP88-209ENST00000574855 KRTAP20-1Q3LI63 56 aa0.6□□□□□ -2.31
NUP88-209ENST00000574855 MDN1Q9NU22 5596 aa0.6□□□□□ -2.31
NUP88-209ENST00000574855 AHNAKQ09666 5890 aaKnown RBP0.59□□□□□ -2.32
NUP88-209ENST00000574855 DSTQ03001 7570 aaKnown RBP0.57□□□□□ -2.32
NUP88-209ENST00000574855 MACF1Q9UPN3 7388 aaKnown RBP0.57□□□□□ -2.32
NUP88-209ENST00000574855 SYNE1Q8NF91 8797 aaKnown RBP0.57□□□□□ -2.32
NUP88-209ENST00000574855 MUC5BQ9HC84 5762 aaPredicted RBP0.55□□□□□ -2.32
NUP88-209ENST00000574855 SYNE2Q8WXH0 6885 aaKnown RBP0.53□□□□□ -2.32
NUP88-209ENST00000574855 GPR98Q8WXG9 6306 aa0.5□□□□□ -2.33
NUP88-209ENST00000574855 NEBP20929 6669 aa0.47□□□□□ -2.33
NUP88-209ENST00000574855 MUC5ACP98088 5654 aa0.44□□□□□ -2.34
NUP88-209ENST00000574855 PHGR1C9JFL3 82 aa0.38□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 206.4 ms