RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 FASNP49327 2511 aaKnown RBP1.05□□□□□ -2.24
NUP88-208ENST00000574087 MYO18BQ8IUG5 2567 aa1.05□□□□□ -2.24
NUP88-208ENST00000574087 TENM3Q9P273 2699 aa1.05□□□□□ -2.24
NUP88-208ENST00000574087 LPAP08519 4548 aa1.05□□□□□ -2.24
NUP88-208ENST00000574087 FLNAP21333 2647 aaKnown RBP1.04□□□□□ -2.24
NUP88-208ENST00000574087 UBR4Q5T4S7 5183 aa1.04□□□□□ -2.24
NUP88-208ENST00000574087 FLNBO75369 2602 aaKnown RBP1.02□□□□□ -2.25
NUP88-208ENST00000574087 FLNCQ14315 2725 aa1.02□□□□□ -2.25
NUP88-208ENST00000574087 HERC1Q15751 4861 aa1□□□□□ -2.25
NUP88-208ENST00000574087 KRTAP5-10Q6L8G5 202 aa1□□□□□ -2.25
NUP88-208ENST00000574087 AHNAKQ09666 5890 aaKnown RBP1□□□□□ -2.25
NUP88-208ENST00000574087 IGSF10Q6WRI0 2623 aa0.99□□□□□ -2.25
NUP88-208ENST00000574087 STAB1Q9NY15 2570 aa0.99□□□□□ -2.25
NUP88-208ENST00000574087 SPRR2GQ9BYE4 73 aa0.99□□□□□ -2.25
NUP88-208ENST00000574087 MUC17Q685J3 4493 aa0.97□□□□□ -2.25
NUP88-208ENST00000574087 MGAM2Q2M2H8 2515 aa0.96□□□□□ -2.26
NUP88-208ENST00000574087 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
NUP88-208ENST00000574087 MACF1Q9UPN3 7388 aaKnown RBP0.94□□□□□ -2.26
NUP88-208ENST00000574087 DNHD1Q96M86 4753 aa0.93□□□□□ -2.26
NUP88-208ENST00000574087 MT1HL1P0DM35 61 aa0.92□□□□□ -2.26
NUP88-208ENST00000574087 KRTAP19-2Q3LHN2 52 aa0.92□□□□□ -2.26
NUP88-208ENST00000574087 KRTAP19-8Q3LI54 63 aa0.91□□□□□ -2.26
NUP88-208ENST00000574087 KRTAP19-5Q3LI72 72 aa0.91□□□□□ -2.26
NUP88-208ENST00000574087 PRM1P04553 51 aa0.9□□□□□ -2.27
NUP88-208ENST00000574087 KIAA1109Q2LD37 5005 aa0.89□□□□□ -2.27
NUP88-208ENST00000574087 PCLOQ9Y6V0 5065 aa0.88□□□□□ -2.27
NUP88-208ENST00000574087 MT1XP80297 61 aa0.88□□□□□ -2.27
NUP88-208ENST00000574087 AHNAK2Q8IVF2 5795 aa0.87□□□□□ -2.27
NUP88-208ENST00000574087 MT1AP04731 61 aa0.87□□□□□ -2.27
NUP88-208ENST00000574087 LRP2P98164 4655 aa0.87□□□□□ -2.27
NUP88-208ENST00000574087 HYDINQ4G0P3 5121 aa0.87□□□□□ -2.27
NUP88-208ENST00000574087 SYNE2Q8WXH0 6885 aaKnown RBP0.86□□□□□ -2.27
NUP88-208ENST00000574087 MUC5BQ9HC84 5762 aaPredicted RBP0.86□□□□□ -2.27
NUP88-208ENST00000574087 MT1EP04732 61 aa0.86□□□□□ -2.27
NUP88-208ENST00000574087 MUC2Q02817 5179 aa0.86□□□□□ -2.27
NUP88-208ENST00000574087 MT1LQ93083 61 aa0.85□□□□□ -2.27
NUP88-208ENST00000574087 RYR3Q15413 4870 aa0.84□□□□□ -2.28
NUP88-208ENST00000574087 MT1BP07438 61 aa0.83□□□□□ -2.28
NUP88-208ENST00000574087 KRTAP19-3Q7Z4W3 81 aa0.83□□□□□ -2.28
NUP88-208ENST00000574087 HMCN2Q8NDA2 5059 aa0.83□□□□□ -2.28
NUP88-208ENST00000574087 KMT2CQ8NEZ4 4911 aaKnown RBP0.83□□□□□ -2.28
NUP88-208ENST00000574087 NEBP20929 6669 aa0.81□□□□□ -2.28
NUP88-208ENST00000574087 MT2AP02795 61 aa0.8□□□□□ -2.28
NUP88-208ENST00000574087 SYNE1Q8NF91 8797 aaKnown RBP0.8□□□□□ -2.28
NUP88-208ENST00000574087 HERC2O95714 4834 aa0.8□□□□□ -2.28
NUP88-208ENST00000574087 MT1FP04733 61 aa0.79□□□□□ -2.28
NUP88-208ENST00000574087 FSIP2Q5CZC0 6907 aa0.79□□□□□ -2.28
NUP88-208ENST00000574087 KRTAP19-7Q3SYF9 63 aa0.78□□□□□ -2.28
NUP88-208ENST00000574087 RYR2Q92736 4967 aa0.77□□□□□ -2.29
NUP88-208ENST00000574087 RYR1P21817 5038 aa0.77□□□□□ -2.29
NUP88-208ENST00000574087 DSTQ03001 7570 aaKnown RBP0.76□□□□□ -2.29
NUP88-208ENST00000574087 SPRR2AP35326 72 aa0.76□□□□□ -2.29
NUP88-208ENST00000574087 MT1HP80294 61 aa0.76□□□□□ -2.29
NUP88-208ENST00000574087 KRTAP6-2Q3LI66 62 aa0.76□□□□□ -2.29
NUP88-208ENST00000574087 SPRR2FQ96RM1 72 aa0.76□□□□□ -2.29
NUP88-208ENST00000574087 SPRR2DP22532 72 aa0.75□□□□□ -2.29
NUP88-208ENST00000574087 MT1GP13640 62 aa0.74□□□□□ -2.29
NUP88-208ENST00000574087 SPRR2BP35325 72 aa0.74□□□□□ -2.29
NUP88-208ENST00000574087 BIRC6Q9NR09 4857 aa0.74□□□□□ -2.29
NUP88-208ENST00000574087 KRTAP21-1Q3LI58 79 aa0.73□□□□□ -2.29
NUP88-208ENST00000574087 KRTAP20-1Q3LI63 56 aa0.73□□□□□ -2.29
NUP88-208ENST00000574087 SPRR2EP22531 72 aa0.71□□□□□ -2.3
NUP88-208ENST00000574087 MT1MQ8N339 61 aa0.7□□□□□ -2.3
NUP88-208ENST00000574087 KMT2DO14686 5537 aa0.7□□□□□ -2.3
NUP88-208ENST00000574087 MUC5ACP98088 5654 aa0.69□□□□□ -2.3
NUP88-208ENST00000574087 ABCA13Q86UQ4 5058 aa0.67□□□□□ -2.3
NUP88-208ENST00000574087 MDN1Q9NU22 5596 aa0.67□□□□□ -2.3
NUP88-208ENST00000574087 KRTAP6-1Q3LI64 71 aa0.65□□□□□ -2.31
NUP88-208ENST00000574087 EPPK1P58107 5090 aaKnown RBP0.64□□□□□ -2.31
NUP88-208ENST00000574087 RNF213Q63HN8 5207 aa0.64□□□□□ -2.31
NUP88-208ENST00000574087 FAT4Q6V0I7 4981 aa0.64□□□□□ -2.31
NUP88-208ENST00000574087 USH2AO75445 5202 aa0.62□□□□□ -2.31
NUP88-208ENST00000574087 SSPOA2VEC9 5147 aa0.6□□□□□ -2.31
NUP88-208ENST00000574087 KRTAP19-6Q3LI70 58 aa0.55□□□□□ -2.32
NUP88-208ENST00000574087 PHGR1C9JFL3 82 aa0.48□□□□□ -2.33
NUP88-208ENST00000574087 MUC12Q9UKN1 5478 aa0.44□□□□□ -2.34
NUP88-208ENST00000574087 KRTAP20-2Q3LI61 65 aa0.37□□□□□ -2.35
NUP88-208ENST00000574087 MT4P47944 62 aa0.31□□□□□ -2.36
Retrieved 78 of 20,778 RNA–protein pairs in 48.8 ms