RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 LOC100996750A0A140TA64 210 aa5.1□□□□□ -1.59
NUP88-207ENST00000573584 KRTAP4-3Q9BYR4 195 aa5.09□□□□□ -1.59
NUP88-207ENST00000573584 MT1GP13640 62 aa5.05□□□□□ -1.6
NUP88-207ENST00000573584 FCGBPQ9Y6R7 5405 aaPredicted RBP5.05□□□□□ -1.6
NUP88-207ENST00000573584 LCE2DQ5TA82 110 aaPredicted RBP5.03□□□□□ -1.6
NUP88-207ENST00000573584 MUC12Q9UKN1 5478 aa5.03□□□□□ -1.6
NUP88-207ENST00000573584 MT1MQ8N339 61 aa5□□□□□ -1.61
NUP88-207ENST00000573584 KRTAP19-3Q7Z4W3 81 aa4.99□□□□□ -1.61
NUP88-207ENST00000573584 CRCT1Q9UGL9 99 aa4.95□□□□□ -1.62
NUP88-207ENST00000573584 DSTQ03001 7570 aaKnown RBP4.84□□□□□ -1.63
NUP88-207ENST00000573584 KRTAP12-4P60329 112 aa4.83□□□□□ -1.64
NUP88-207ENST00000573584 LCE5AQ5TCM9 118 aa4.79□□□□□ -1.64
NUP88-207ENST00000573584 SPRR2FQ96RM1 72 aa4.76□□□□□ -1.65
NUP88-207ENST00000573584 LCE3BQ5TA77 95 aa4.7□□□□□ -1.66
NUP88-207ENST00000573584 MACF1Q9UPN3 7388 aaKnown RBP4.63□□□□□ -1.67
NUP88-207ENST00000573584 KRTAP4-9Q9BYQ8 210 aa4.62□□□□□ -1.67
NUP88-207ENST00000573584 MT1AP04731 61 aa4.57□□□□□ -1.68
NUP88-207ENST00000573584 KRTAP6-1Q3LI64 71 aa4.57□□□□□ -1.68
NUP88-207ENST00000573584 SYNE1Q8NF91 8797 aaKnown RBP4.55□□□□□ -1.68
NUP88-207ENST00000573584 MDN1Q9NU22 5596 aa4.52□□□□□ -1.69
NUP88-207ENST00000573584 SYNE2Q8WXH0 6885 aaKnown RBP4.48□□□□□ -1.69
NUP88-207ENST00000573584 LCE3DQ9BYE3 92 aa4.47□□□□□ -1.69
NUP88-207ENST00000573584 KRTAP9-2Q9BYQ4 174 aa4.44□□□□□ -1.7
NUP88-207ENST00000573584 LCE3EQ5T5B0 92 aa4.42□□□□□ -1.7
NUP88-207ENST00000573584 LCE1AQ5T7P2 110 aa4.4□□□□□ -1.71
NUP88-207ENST00000573584 KRTAP5-5Q701N2 237 aaPredicted RBP4.39□□□□□ -1.71
NUP88-207ENST00000573584 KRTAP5-9P26371 169 aa4.32□□□□□ -1.72
NUP88-207ENST00000573584 KRTAP9-7A8MTY7 169 aa4.32□□□□□ -1.72
NUP88-207ENST00000573584 PRM1P04553 51 aa4.28□□□□□ -1.72
NUP88-207ENST00000573584 SPRR2EP22531 72 aa4.28□□□□□ -1.72
NUP88-207ENST00000573584 SPRR2BP35325 72 aa4.28□□□□□ -1.72
NUP88-207ENST00000573584 SPRR2AP35326 72 aa4.28□□□□□ -1.72
NUP88-207ENST00000573584 KRTAP9-4Q9BYQ2 154 aa4.24□□□□□ -1.73
NUP88-207ENST00000573584 KRTAP9-6A0A140TA67 174 aa4.21□□□□□ -1.74
NUP88-207ENST00000573584 KRTAP6-2Q3LI66 62 aa4.12□□□□□ -1.75
NUP88-207ENST00000573584 OBSCNQ5VST9 7968 aa4.09□□□□□ -1.75
NUP88-207ENST00000573584 SPRR2DP22532 72 aa4.08□□□□□ -1.76
NUP88-207ENST00000573584 MT3P25713 68 aa4.05□□□□□ -1.76
NUP88-207ENST00000573584 KRTAP6-3Q3LI67 103 aa3.97□□□□□ -1.77
NUP88-207ENST00000573584 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.79□□□□□ -1.8
NUP88-207ENST00000573584 KRTAP5-4Q6L8H1 288 aa3.78□□□□□ -1.8
NUP88-207ENST00000573584 KRTAP2-2Q9BYT5 123 aa3.77□□□□□ -1.81
NUP88-207ENST00000573584 KRTAP4-6Q9BYQ5 205 aa3.67□□□□□ -1.82
NUP88-207ENST00000573584 MT4P47944 62 aa3.63□□□□□ -1.83
NUP88-207ENST00000573584 NEBP20929 6669 aa3.6□□□□□ -1.83
NUP88-207ENST00000573584 KRTAP20-2Q3LI61 65 aa3.57□□□□□ -1.84
NUP88-207ENST00000573584 KRTAP5-2Q701N4 177 aa3.56□□□□□ -1.84
NUP88-207ENST00000573584 LCE4AQ5TA78 99 aa3.5□□□□□ -1.85
NUP88-207ENST00000573584 HMCN1Q96RW7 5635 aa3.47□□□□□ -1.85
NUP88-207ENST00000573584 MUC5ACP98088 5654 aa3.46□□□□□ -1.86
NUP88-207ENST00000573584 LCE1DQ5T752 114 aa3.4□□□□□ -1.87
NUP88-207ENST00000573584 KRTAP5-3Q6L8H2 238 aa3.38□□□□□ -1.87
NUP88-207ENST00000573584 GPR98Q8WXG9 6306 aa3.32□□□□□ -1.88
NUP88-207ENST00000573584 KRTAP20-1Q3LI63 56 aa3.31□□□□□ -1.88
NUP88-207ENST00000573584 LCE1BQ5T7P3 118 aa3.27□□□□□ -1.89
NUP88-207ENST00000573584 LCE1EQ5T753 118 aa3.26□□□□□ -1.89
NUP88-207ENST00000573584 KRTAP5-10Q6L8G5 202 aa3.24□□□□□ -1.89
NUP88-207ENST00000573584 KRTAP4-11Q9BYQ6 195 aa3.22□□□□□ -1.89
NUP88-207ENST00000573584 KRTAP5-1Q6L8H4 278 aa3.17□□□□□ -1.9
NUP88-207ENST00000573584 KRTAP4-2Q9BYR5 136 aa3.1□□□□□ -1.91
NUP88-207ENST00000573584 LCE1CQ5T751 118 aa3.09□□□□□ -1.91
NUP88-207ENST00000573584 KRTAP21-2Q3LI59 83 aa2.94□□□□□ -1.94
NUP88-207ENST00000573584 MUC5BQ9HC84 5762 aaPredicted RBP2.92□□□□□ -1.94
NUP88-207ENST00000573584 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.91□□□□□ -1.94
NUP88-207ENST00000573584 MUC19Q7Z5P9 8384 aa2.88□□□□□ -1.95
NUP88-207ENST00000573584 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
NUP88-207ENST00000573584 AHNAKQ09666 5890 aaKnown RBP2.75□□□□□ -1.97
NUP88-207ENST00000573584 KRTAP5-7Q6L8G8 165 aa2.74□□□□□ -1.97
NUP88-207ENST00000573584 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
NUP88-207ENST00000573584 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
NUP88-207ENST00000573584 AHNAK2Q8IVF2 5795 aa2.68□□□□□ -1.98
NUP88-207ENST00000573584 KRTAP5-11Q6L8G4 156 aa2.63□□□□□ -1.99
NUP88-207ENST00000573584 KRTAP4-12Q9BQ66 201 aa2.61□□□□□ -1.99
NUP88-207ENST00000573584 KRTAP9-9Q9BYP9 154 aa2.47□□□□□ -2.01
NUP88-207ENST00000573584 LCE1FQ5T754 118 aa2.34□□□□□ -2.03
NUP88-207ENST00000573584 PHGR1C9JFL3 82 aa2.28□□□□□ -2.04
NUP88-207ENST00000573584 MUC16Q8WXI7 14507 aa1.51□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 94.8 ms