RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 SPRR2DP22532 72 aa3.58□□□□□ -1.84
SMG6-213ENST00000573166 MT1GP13640 62 aa3.56□□□□□ -1.84
SMG6-213ENST00000573166 KMT2DO14686 5537 aa3.54□□□□□ -1.84
SMG6-213ENST00000573166 MT1EP04732 61 aa3.52□□□□□ -1.85
SMG6-213ENST00000573166 KRTAP19-3Q7Z4W3 81 aa3.52□□□□□ -1.85
SMG6-213ENST00000573166 MT1LQ93083 61 aa3.48□□□□□ -1.85
SMG6-213ENST00000573166 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
SMG6-213ENST00000573166 SSPOA2VEC9 5147 aa3.47□□□□□ -1.85
SMG6-213ENST00000573166 KRTAP9-7A8MTY7 169 aa3.46□□□□□ -1.85
SMG6-213ENST00000573166 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.46□□□□□ -1.85
SMG6-213ENST00000573166 FCGBPQ9Y6R7 5405 aaPredicted RBP3.45□□□□□ -1.86
SMG6-213ENST00000573166 KRTAP19-7Q3SYF9 63 aa3.43□□□□□ -1.86
SMG6-213ENST00000573166 KRTAP4-7Q9BYR0 210 aa3.43□□□□□ -1.86
SMG6-213ENST00000573166 KRTAP6-3Q3LI67 103 aa3.39□□□□□ -1.87
SMG6-213ENST00000573166 SYNE1Q8NF91 8797 aaKnown RBP3.39□□□□□ -1.87
SMG6-213ENST00000573166 MT1MQ8N339 61 aa3.38□□□□□ -1.87
SMG6-213ENST00000573166 SYNE2Q8WXH0 6885 aaKnown RBP3.36□□□□□ -1.87
SMG6-213ENST00000573166 MACF1Q9UPN3 7388 aaKnown RBP3.35□□□□□ -1.87
SMG6-213ENST00000573166 KRTAP4-3Q9BYR4 195 aa3.31□□□□□ -1.88
SMG6-213ENST00000573166 LCE3BQ5TA77 95 aa3.3□□□□□ -1.88
SMG6-213ENST00000573166 KRTAP12-4P60329 112 aa3.3□□□□□ -1.88
SMG6-213ENST00000573166 LCE1AQ5T7P2 110 aa3.26□□□□□ -1.89
SMG6-213ENST00000573166 KRTAP9-6A8MVA2 160 aa3.24□□□□□ -1.89
SMG6-213ENST00000573166 MUC12Q9UKN1 5478 aa3.23□□□□□ -1.89
SMG6-213ENST00000573166 LOC100996750A0A140TA64 210 aa3.21□□□□□ -1.9
SMG6-213ENST00000573166 KRTAP20-1Q3LI63 56 aa3.2□□□□□ -1.9
SMG6-213ENST00000573166 LCE5AQ5TCM9 118 aa3.2□□□□□ -1.9
SMG6-213ENST00000573166 MT4P47944 62 aa3.17□□□□□ -1.9
SMG6-213ENST00000573166 KRTAP2-3P0C7H8 128 aa3.15□□□□□ -1.91
SMG6-213ENST00000573166 KRTAP5-9P26371 169 aa3.15□□□□□ -1.91
SMG6-213ENST00000573166 KRTAP2-4Q9BYR9 128 aa3.15□□□□□ -1.91
SMG6-213ENST00000573166 MDN1Q9NU22 5596 aa3.08□□□□□ -1.92
SMG6-213ENST00000573166 KRTAP2-2Q9BYT5 123 aa3.07□□□□□ -1.92
SMG6-213ENST00000573166 KRTAP2-1Q9BYU5 128 aa3.07□□□□□ -1.92
SMG6-213ENST00000573166 MT1AP04731 61 aa3.03□□□□□ -1.92
SMG6-213ENST00000573166 NEBP20929 6669 aa3.01□□□□□ -1.93
SMG6-213ENST00000573166 LCE3DQ9BYE3 92 aa3□□□□□ -1.93
SMG6-213ENST00000573166 MT3P25713 68 aa2.99□□□□□ -1.93
SMG6-213ENST00000573166 KRTAP4-9Q9BYQ8 210 aa2.98□□□□□ -1.93
SMG6-213ENST00000573166 LCE3EQ5T5B0 92 aa2.96□□□□□ -1.94
SMG6-213ENST00000573166 LCE4AQ5TA78 99 aa2.95□□□□□ -1.94
SMG6-213ENST00000573166 KRTAP6-1Q3LI64 71 aa2.93□□□□□ -1.94
SMG6-213ENST00000573166 KRTAP6-2Q3LI66 62 aa2.83□□□□□ -1.96
SMG6-213ENST00000573166 KRTAP9-4Q9BYQ2 154 aa2.83□□□□□ -1.96
SMG6-213ENST00000573166 PRM1P04553 51 aa2.78□□□□□ -1.96
SMG6-213ENST00000573166 LCE1DQ5T752 114 aa2.78□□□□□ -1.96
SMG6-213ENST00000573166 KRTAP4-6Q9BYQ5 205 aa2.73□□□□□ -1.97
SMG6-213ENST00000573166 LCE1BQ5T7P3 118 aa2.72□□□□□ -1.97
SMG6-213ENST00000573166 KRTAP20-2Q3LI61 65 aa2.65□□□□□ -1.99
SMG6-213ENST00000573166 KRTAP5-5Q701N2 237 aaPredicted RBP2.58□□□□□ -2
SMG6-213ENST00000573166 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
SMG6-213ENST00000573166 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
SMG6-213ENST00000573166 KRTAP5-4Q6L8H1 288 aa2.53□□□□□ -2.01
SMG6-213ENST00000573166 HMCN1Q96RW7 5635 aa2.44□□□□□ -2.02
SMG6-213ENST00000573166 KRTAP9-9Q9BYP9 154 aa2.4□□□□□ -2.03
SMG6-213ENST00000573166 KRTAP4-11Q9BYQ6 195 aa2.39□□□□□ -2.03
SMG6-213ENST00000573166 KRTAP5-3Q6L8H2 238 aa2.35□□□□□ -2.03
SMG6-213ENST00000573166 MUC5ACP98088 5654 aa2.32□□□□□ -2.04
SMG6-213ENST00000573166 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
SMG6-213ENST00000573166 LCE1EQ5T753 118 aa2.25□□□□□ -2.05
SMG6-213ENST00000573166 KRTAP5-2Q701N4 177 aa2.22□□□□□ -2.05
SMG6-213ENST00000573166 AHNAK2Q8IVF2 5795 aa2.22□□□□□ -2.05
SMG6-213ENST00000573166 LCE1CQ5T751 118 aa2.19□□□□□ -2.06
SMG6-213ENST00000573166 KRTAP5-8O75690 187 aa2.13□□□□□ -2.07
SMG6-213ENST00000573166 KRTAP4-12Q9BQ66 201 aa2.09□□□□□ -2.07
SMG6-213ENST00000573166 KRTAP4-2Q9BYR5 136 aa2.09□□□□□ -2.07
SMG6-213ENST00000573166 KRTAP5-10Q6L8G5 202 aa1.99□□□□□ -2.09
SMG6-213ENST00000573166 KRTAP4-4Q9BYR3 166 aa1.98□□□□□ -2.09
SMG6-213ENST00000573166 MUC5BQ9HC84 5762 aaPredicted RBP1.98□□□□□ -2.09
SMG6-213ENST00000573166 KRTAP5-1Q6L8H4 278 aa1.97□□□□□ -2.09
SMG6-213ENST00000573166 AHNAKQ09666 5890 aaKnown RBP1.89□□□□□ -2.11
SMG6-213ENST00000573166 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
SMG6-213ENST00000573166 KRTAP5-11Q6L8G4 156 aa1.78□□□□□ -2.12
SMG6-213ENST00000573166 KRTAP21-2Q3LI59 83 aa1.7□□□□□ -2.14
SMG6-213ENST00000573166 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.7□□□□□ -2.14
SMG6-213ENST00000573166 PHGR1C9JFL3 82 aa1.59□□□□□ -2.16
SMG6-213ENST00000573166 KRTAP21-1Q3LI58 79 aa1.42□□□□□ -2.18
SMG6-213ENST00000573166 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 84.8 ms