RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 H7BZZ5 65 aa3.79□□□□□ -1.8
CIITA-208ENST00000572665 KRTAP2-1Q9BYU5 128 aa3.78□□□□□ -1.8
CIITA-208ENST00000572665 P0C880 135 aa3.77□□□□□ -1.81
CIITA-208ENST00000572665 LINC01554Q52M75 96 aa3.76□□□□□ -1.81
CIITA-208ENST00000572665 SPRR2DP22532 72 aa3.75□□□□□ -1.81
CIITA-208ENST00000572665 SPTSSBQ8NFR3 76 aa3.75□□□□□ -1.81
CIITA-208ENST00000572665 CHKB-CPT1BH3BT56 60 aa3.74□□□□□ -1.81
CIITA-208ENST00000572665 CCDC179H3BU77 68 aa3.73□□□□□ -1.81
CIITA-208ENST00000572665 COA5Q86WW8 74 aa3.71□□□□□ -1.82
CIITA-208ENST00000572665 ATP5EP56381 51 aaPredicted RBP3.64□□□□□ -1.83
CIITA-208ENST00000572665 OBSCNQ5VST9 7968 aa3.63□□□□□ -1.83
CIITA-208ENST00000572665 PSPHP1O15172 72 aa3.62□□□□□ -1.83
CIITA-208ENST00000572665 TMEM258P61165 79 aa3.62□□□□□ -1.83
CIITA-208ENST00000572665 KRTAP5-5Q701N2 237 aaPredicted RBP3.62□□□□□ -1.83
CIITA-208ENST00000572665 PP632Q6XCG6 107 aa3.6□□□□□ -1.83
CIITA-208ENST00000572665 LUZP6Q538Z0 58 aa3.58□□□□□ -1.84
CIITA-208ENST00000572665 KRTAP4-3Q9BYR4 195 aa3.56□□□□□ -1.84
CIITA-208ENST00000572665 KRTAP13-4Q3LI77 160 aa3.55□□□□□ -1.84
CIITA-208ENST00000572665 SPINT4Q6UDR6 99 aa3.55□□□□□ -1.84
CIITA-208ENST00000572665 SERP1Q9Y6X1 66 aa3.55□□□□□ -1.84
CIITA-208ENST00000572665 A0A1B0GU69 56 aa3.51□□□□□ -1.85
CIITA-208ENST00000572665 A0A1B0GU33 70 aa3.5□□□□□ -1.85
CIITA-208ENST00000572665 LINC01558Q9Y6Z2 57 aa3.48□□□□□ -1.85
CIITA-208ENST00000572665 SPATA8Q6RVD6 105 aa3.46□□□□□ -1.86
CIITA-208ENST00000572665 PRR15LQ9BU68 103 aa3.45□□□□□ -1.86
CIITA-208ENST00000572665 KRTAP19-3Q7Z4W3 81 aa3.44□□□□□ -1.86
CIITA-208ENST00000572665 MT1EP04732 61 aa3.42□□□□□ -1.86
CIITA-208ENST00000572665 KRTAP19-7Q3SYF9 63 aa3.42□□□□□ -1.86
CIITA-208ENST00000572665 A0A0D9SG42 100 aa3.41□□□□□ -1.86
CIITA-208ENST00000572665 V9GYY9 64 aa3.41□□□□□ -1.86
CIITA-208ENST00000572665 KRTAP12-1P59990 96 aa3.4□□□□□ -1.87
CIITA-208ENST00000572665 KRTAP5-2Q701N4 177 aa3.4□□□□□ -1.87
CIITA-208ENST00000572665 PRO0628Q9UI54 55 aa3.4□□□□□ -1.87
CIITA-208ENST00000572665 DSTQ03001 7570 aaKnown RBP3.39□□□□□ -1.87
CIITA-208ENST00000572665 Q1T7F1 81 aa3.38□□□□□ -1.87
CIITA-208ENST00000572665 MT1GP13640 62 aa3.37□□□□□ -1.87
CIITA-208ENST00000572665 RPS28P62857 69 aaKnown RBP3.37□□□□□ -1.87
CIITA-208ENST00000572665 UQCR11O14957 56 aa3.35□□□□□ -1.87
CIITA-208ENST00000572665 LCE1CQ5T751 118 aa3.35□□□□□ -1.87
CIITA-208ENST00000572665 LCE1BQ5T7P3 118 aa3.35□□□□□ -1.87
CIITA-208ENST00000572665 KRTAP19-5Q3LI72 72 aa3.32□□□□□ -1.88
CIITA-208ENST00000572665 GPR98Q8WXG9 6306 aa3.29□□□□□ -1.88
CIITA-208ENST00000572665 MIR22HGQ0VDD5 57 aa3.28□□□□□ -1.88
CIITA-208ENST00000572665 MT1MQ8N339 61 aa3.27□□□□□ -1.89
CIITA-208ENST00000572665 TNP1P09430 55 aa3.26□□□□□ -1.89
CIITA-208ENST00000572665 MT4P47944 62 aa3.26□□□□□ -1.89
CIITA-208ENST00000572665 MT1LQ93083 61 aa3.25□□□□□ -1.89
CIITA-208ENST00000572665 C10orf95Q9H7T3 257 aa3.23□□□□□ -1.89
CIITA-208ENST00000572665 A6NED7 52 aa3.2□□□□□ -1.9
CIITA-208ENST00000572665 K7ERS5 55 aa3.18□□□□□ -1.9
CIITA-208ENST00000572665 KRTAP25-1Q3LHN0 102 aa3.18□□□□□ -1.9
CIITA-208ENST00000572665 HMCN1Q96RW7 5635 aa3.14□□□□□ -1.91
CIITA-208ENST00000572665 KRTAP5-10Q6L8G5 202 aa3.13□□□□□ -1.91
CIITA-208ENST00000572665 CDC42SE1Q9NRR8 79 aa3.12□□□□□ -1.91
CIITA-208ENST00000572665 KRTAP12-3P60328 96 aa3.11□□□□□ -1.91
CIITA-208ENST00000572665 AHNAK2Q8IVF2 5795 aa3.05□□□□□ -1.92
CIITA-208ENST00000572665 KRTAP5-7Q6L8G8 165 aa3.05□□□□□ -1.92
CIITA-208ENST00000572665 KRTAP12-4P60329 112 aa3.04□□□□□ -1.92
CIITA-208ENST00000572665 KRTAP20-2Q3LI61 65 aa3.02□□□□□ -1.93
CIITA-208ENST00000572665 ROMO1P60602 79 aa3.01□□□□□ -1.93
CIITA-208ENST00000572665 BRK1Q8WUW1 75 aa2.94□□□□□ -1.94
CIITA-208ENST00000572665 KRTAP5-8O75690 187 aa2.83□□□□□ -1.96
CIITA-208ENST00000572665 SYNE1Q8NF91 8797 aaKnown RBP2.82□□□□□ -1.96
CIITA-208ENST00000572665 MT1AP04731 61 aa2.78□□□□□ -1.96
CIITA-208ENST00000572665 PMAIP1Q13794 54 aa2.78□□□□□ -1.96
CIITA-208ENST00000572665 KRTAP6-1Q3LI64 71 aa2.73□□□□□ -1.97
CIITA-208ENST00000572665 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
CIITA-208ENST00000572665 KRTAP6-2Q3LI66 62 aa2.65□□□□□ -1.99
CIITA-208ENST00000572665 KTN1-AS1Q86SY8 53 aa2.58□□□□□ -2
CIITA-208ENST00000572665 MUC5ACP98088 5654 aa2.55□□□□□ -2
CIITA-208ENST00000572665 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
CIITA-208ENST00000572665 AHNAKQ09666 5890 aaKnown RBP2.51□□□□□ -2.01
CIITA-208ENST00000572665 KRTAP21-2Q3LI59 83 aa2.36□□□□□ -2.03
CIITA-208ENST00000572665 PHGR1C9JFL3 82 aa1.86□□□□□ -2.11
CIITA-208ENST00000572665 INE1O15225 51 aa1.59□□□□□ -2.15
CIITA-208ENST00000572665 PRM1P04553 51 aa1.54□□□□□ -2.16
CIITA-208ENST00000572665 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
CIITA-208ENST00000572665 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 66.8 ms