RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 MT1MQ8N339 61 aa7.13□□□□□ -1.27
NUP88-204ENST00000572290 V9GYY9 64 aa7.13□□□□□ -1.27
NUP88-204ENST00000572290 PSPHP1O15172 72 aa7.07□□□□□ -1.28
NUP88-204ENST00000572290 LOC100996750A0A140TA64 210 aa7.06□□□□□ -1.28
NUP88-204ENST00000572290 Q1T7F1 81 aa7.06□□□□□ -1.28
NUP88-204ENST00000572290 KRTAP4-6Q9BYQ5 205 aa7.06□□□□□ -1.28
NUP88-204ENST00000572290 K7ERS5 55 aa7.04□□□□□ -1.28
NUP88-204ENST00000572290 KRTAP12-3P60328 96 aa7□□□□□ -1.29
NUP88-204ENST00000572290 KRTAP4-9Q9BYQ8 210 aa6.99□□□□□ -1.29
NUP88-204ENST00000572290 KRTAP25-1Q3LHN0 102 aa6.98□□□□□ -1.29
NUP88-204ENST00000572290 KRTAP4-3Q9BYR4 195 aa6.95□□□□□ -1.3
NUP88-204ENST00000572290 LCE4AQ5TA78 99 aa6.87□□□□□ -1.31
NUP88-204ENST00000572290 A6NED7 52 aa6.84□□□□□ -1.31
NUP88-204ENST00000572290 LCE1DQ5T752 114 aa6.83□□□□□ -1.32
NUP88-204ENST00000572290 KRTAP4-7Q9BYR0 210 aa6.83□□□□□ -1.32
NUP88-204ENST00000572290 MT4P47944 62 aa6.77□□□□□ -1.33
NUP88-204ENST00000572290 HMCN1Q96RW7 5635 aa6.76□□□□□ -1.33
NUP88-204ENST00000572290 RPS28P62857 69 aaKnown RBP6.75□□□□□ -1.33
NUP88-204ENST00000572290 KRTAP5-4Q6L8H1 288 aa6.74□□□□□ -1.33
NUP88-204ENST00000572290 KRTAP23-1A1A580 65 aa6.72□□□□□ -1.33
NUP88-204ENST00000572290 PCP4P48539 62 aa6.7□□□□□ -1.34
NUP88-204ENST00000572290 CDC42SE1Q9NRR8 79 aa6.67□□□□□ -1.34
NUP88-204ENST00000572290 KRTAP19-4Q3LI73 84 aa6.62□□□□□ -1.35
NUP88-204ENST00000572290 AHNAK2Q8IVF2 5795 aa6.58□□□□□ -1.36
NUP88-204ENST00000572290 KRTAP15-1Q3LI76 137 aa6.57□□□□□ -1.36
NUP88-204ENST00000572290 ROMO1P60602 79 aa6.56□□□□□ -1.36
NUP88-204ENST00000572290 KRTAP5-10Q6L8G5 202 aa6.53□□□□□ -1.36
NUP88-204ENST00000572290 KRTAP5-5Q701N2 237 aaPredicted RBP6.52□□□□□ -1.37
NUP88-204ENST00000572290 LCE3CQ5T5A8 94 aa6.45□□□□□ -1.38
NUP88-204ENST00000572290 KRTAP5-7Q6L8G8 165 aa6.37□□□□□ -1.39
NUP88-204ENST00000572290 KRTAP20-2Q3LI61 65 aa6.36□□□□□ -1.39
NUP88-204ENST00000572290 SYNE1Q8NF91 8797 aaKnown RBP6.36□□□□□ -1.39
NUP88-204ENST00000572290 KRTAP12-4P60329 112 aa6.35□□□□□ -1.39
NUP88-204ENST00000572290 SPRR5A0A1B0GTR4 108 aa6.34□□□□□ -1.39
NUP88-204ENST00000572290 KRTAP5-3Q6L8H2 238 aa6.27□□□□□ -1.41
NUP88-204ENST00000572290 MT1AP04731 61 aa6.11□□□□□ -1.43
NUP88-204ENST00000572290 KRTAP9-6A8MVA2 160 aa6.07□□□□□ -1.44
NUP88-204ENST00000572290 KRTAP6-1Q3LI64 71 aa6.06□□□□□ -1.44
NUP88-204ENST00000572290 KRTAP9-9Q9BYP9 154 aa5.94□□□□□ -1.46
NUP88-204ENST00000572290 KRTAP9-4Q9BYQ2 154 aa5.94□□□□□ -1.46
NUP88-204ENST00000572290 BRK1Q8WUW1 75 aa5.93□□□□□ -1.46
NUP88-204ENST00000572290 KRTAP4-12Q9BQ66 201 aa5.93□□□□□ -1.46
NUP88-204ENST00000572290 KRTAP5-2Q701N4 177 aa5.92□□□□□ -1.46
NUP88-204ENST00000572290 KRTAP6-2Q3LI66 62 aa5.78□□□□□ -1.48
NUP88-204ENST00000572290 KRTAP4-11Q9BYQ6 195 aa5.78□□□□□ -1.48
NUP88-204ENST00000572290 AHNAKQ09666 5890 aaKnown RBP5.61□□□□□ -1.51
NUP88-204ENST00000572290 MT3P25713 68 aa5.6□□□□□ -1.51
NUP88-204ENST00000572290 KRTAP5-8O75690 187 aa5.59□□□□□ -1.51
NUP88-204ENST00000572290 PMAIP1Q13794 54 aa5.58□□□□□ -1.52
NUP88-204ENST00000572290 OBSCNQ5VST9 7968 aa5.56□□□□□ -1.52
NUP88-204ENST00000572290 MUC5ACP98088 5654 aa5.54□□□□□ -1.52
NUP88-204ENST00000572290 SVIPQ8NHG7 77 aa5.5□□□□□ -1.53
NUP88-204ENST00000572290 KRTAP4-2Q9BYR5 136 aa5.49□□□□□ -1.53
NUP88-204ENST00000572290 MUC5BQ9HC84 5762 aaPredicted RBP5.49□□□□□ -1.53
NUP88-204ENST00000572290 PRAC1Q96KF2 57 aa5.37□□□□□ -1.55
NUP88-204ENST00000572290 KRTAP5-1Q6L8H4 278 aa5.29□□□□□ -1.56
NUP88-204ENST00000572290 PRO0628Q9UI54 55 aa5.17□□□□□ -1.58
NUP88-204ENST00000572290 LCE1EQ5T753 118 aa5.11□□□□□ -1.59
NUP88-204ENST00000572290 H3BS24 57 aa5.07□□□□□ -1.6
NUP88-204ENST00000572290 KTN1-AS1Q86SY8 53 aa4.96□□□□□ -1.62
NUP88-204ENST00000572290 LCE1BQ5T7P3 118 aa4.82□□□□□ -1.64
NUP88-204ENST00000572290 LCE1CQ5T751 118 aa4.74□□□□□ -1.65
NUP88-204ENST00000572290 LCE3DQ9BYE3 92 aa4.67□□□□□ -1.66
NUP88-204ENST00000572290 LUZP6Q538Z0 58 aa4.55□□□□□ -1.68
NUP88-204ENST00000572290 LCE3EQ5T5B0 92 aa4.41□□□□□ -1.7
NUP88-204ENST00000572290 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.32□□□□□ -1.72
NUP88-204ENST00000572290 KRTAP5-11Q6L8G4 156 aa4.28□□□□□ -1.72
NUP88-204ENST00000572290 LCE1FQ5T754 118 aa4.15□□□□□ -1.75
NUP88-204ENST00000572290 KRTAP21-2Q3LI59 83 aa3.99□□□□□ -1.77
NUP88-204ENST00000572290 PHGR1C9JFL3 82 aa3.85□□□□□ -1.79
NUP88-204ENST00000572290 NDUFAF8A1L188 74 aa3.67□□□□□ -1.82
NUP88-204ENST00000572290 KRTAP4-4Q9BYR3 166 aa3.64□□□□□ -1.83
NUP88-204ENST00000572290 A0A0A0MQY5 61 aa3.49□□□□□ -1.85
NUP88-204ENST00000572290 MUC19Q7Z5P9 8384 aa3.42□□□□□ -1.86
NUP88-204ENST00000572290 PRM1P04553 51 aa3.36□□□□□ -1.87
NUP88-204ENST00000572290 INE1O15225 51 aa3.21□□□□□ -1.9
NUP88-204ENST00000572290 KRTAP21-1Q3LI58 79 aa2.95□□□□□ -1.94
NUP88-204ENST00000572290 MUC16Q8WXI7 14507 aa2.43□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 32.9 ms