RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 TAX1BP3O14907 124 aa2□□□□□ -2.09
VPS53-208ENST00000570650 LINC00208Q96KT6 92 aa1.98□□□□□ -2.09
VPS53-208ENST00000570650 KRTAP12-4P60329 112 aa1.97□□□□□ -2.09
VPS53-208ENST00000570650 DMAC1Q96GE9 116 aa1.96□□□□□ -2.1
VPS53-208ENST00000570650 MP68P56378 58 aa1.93□□□□□ -2.1
VPS53-208ENST00000570650 FAM240AA0A1B0GVK7 77 aa1.92□□□□□ -2.1
VPS53-208ENST00000570650 TRAV7A0A075B6U4 112 aa1.91□□□□□ -2.1
VPS53-208ENST00000570650 HIST1H4AP62805 103 aaKnown RBP1.91□□□□□ -2.1
VPS53-208ENST00000570650 KRTAP13-4Q3LI77 160 aa1.91□□□□□ -2.1
VPS53-208ENST00000570650 KRTAP5-8O75690 187 aa1.9□□□□□ -2.11
VPS53-208ENST00000570650 SPTSSBQ8NFR3 76 aa1.9□□□□□ -2.11
VPS53-208ENST00000570650 C10orf95Q9H7T3 257 aa1.9□□□□□ -2.11
VPS53-208ENST00000570650 MUC5ACP98088 5654 aa1.9□□□□□ -2.11
VPS53-208ENST00000570650 SYNE1Q8NF91 8797 aaKnown RBP1.89□□□□□ -2.11
VPS53-208ENST00000570650 AHNAKQ09666 5890 aaKnown RBP1.88□□□□□ -2.11
VPS53-208ENST00000570650 ATP5EP2Q5VTU8 51 aa1.88□□□□□ -2.11
VPS53-208ENST00000570650 H3BPC8 53 aa1.86□□□□□ -2.11
VPS53-208ENST00000570650 ACYP2P14621 99 aa1.86□□□□□ -2.11
VPS53-208ENST00000570650 MUC5BQ9HC84 5762 aaPredicted RBP1.85□□□□□ -2.11
VPS53-208ENST00000570650 SMIM26A0A096LP01 95 aa1.84□□□□□ -2.11
VPS53-208ENST00000570650 CHKB-CPT1BH3BT56 60 aa1.83□□□□□ -2.12
VPS53-208ENST00000570650 PSPHP1O15172 72 aa1.83□□□□□ -2.12
VPS53-208ENST00000570650 ETDBQ3ZM63 59 aa1.83□□□□□ -2.12
VPS53-208ENST00000570650 LOC105371267A0A1B0GV96 52 aa1.82□□□□□ -2.12
VPS53-208ENST00000570650 SPINT4Q6UDR6 99 aa1.82□□□□□ -2.12
VPS53-208ENST00000570650 SMIM6P0DI80 62 aa1.81□□□□□ -2.12
VPS53-208ENST00000570650 PRO0628Q9UI54 55 aa1.81□□□□□ -2.12
VPS53-208ENST00000570650 F8W1H4 67 aa1.8□□□□□ -2.12
VPS53-208ENST00000570650 TNP1P09430 55 aa1.79□□□□□ -2.12
VPS53-208ENST00000570650 KRTAP12-3P60328 96 aa1.79□□□□□ -2.12
VPS53-208ENST00000570650 KRTAP12-1P59990 96 aa1.78□□□□□ -2.12
VPS53-208ENST00000570650 COL5A1-AS1Q5SY13 56 aa1.77□□□□□ -2.13
VPS53-208ENST00000570650 GTF2H5Q6ZYL4 71 aa1.77□□□□□ -2.13
VPS53-208ENST00000570650 SPATA8Q6RVD6 105 aa1.76□□□□□ -2.13
VPS53-208ENST00000570650 LINC00643Q86TS7 51 aa1.76□□□□□ -2.13
VPS53-208ENST00000570650 ANAPC13Q9BS18 74 aa1.76□□□□□ -2.13
VPS53-208ENST00000570650 MUC19Q7Z5P9 8384 aa1.75□□□□□ -2.13
VPS53-208ENST00000570650 PMAIP1Q13794 54 aa1.75□□□□□ -2.13
VPS53-208ENST00000570650 MT1AP04731 61 aa1.73□□□□□ -2.13
VPS53-208ENST00000570650 KRTAP6-1Q3LI64 71 aa1.73□□□□□ -2.13
VPS53-208ENST00000570650 SCGB1A1P11684 91 aa1.72□□□□□ -2.13
VPS53-208ENST00000570650 SERP1Q9Y6X1 66 aa1.72□□□□□ -2.13
VPS53-208ENST00000570650 SMIM20Q8N5G0 67 aa1.71□□□□□ -2.14
VPS53-208ENST00000570650 A0A1B0GU33 70 aa1.7□□□□□ -2.14
VPS53-208ENST00000570650 KRTAP6-2Q3LI66 62 aa1.7□□□□□ -2.14
VPS53-208ENST00000570650 LUZP6Q538Z0 58 aa1.68□□□□□ -2.14
VPS53-208ENST00000570650 SPANXA2-OT1Q8N9U9 137 aa1.65□□□□□ -2.15
VPS53-208ENST00000570650 K7ERS5 55 aa1.63□□□□□ -2.15
VPS53-208ENST00000570650 KRTAP25-1Q3LHN0 102 aa1.63□□□□□ -2.15
VPS53-208ENST00000570650 SNURFQ9Y675 71 aa1.62□□□□□ -2.15
VPS53-208ENST00000570650 COA5Q86WW8 74 aa1.61□□□□□ -2.15
VPS53-208ENST00000570650 A6NED7 52 aa1.6□□□□□ -2.15
VPS53-208ENST00000570650 RPS28P62857 69 aaKnown RBP1.6□□□□□ -2.15
VPS53-208ENST00000570650 SERP2Q8N6R1 65 aa1.57□□□□□ -2.16
VPS53-208ENST00000570650 A0A1B0GU69 56 aa1.55□□□□□ -2.16
VPS53-208ENST00000570650 KTN1-AS1Q86SY8 53 aa1.55□□□□□ -2.16
VPS53-208ENST00000570650 A0A1B0GV90 55 aa1.52□□□□□ -2.17
VPS53-208ENST00000570650 J3QR89 54 aa1.51□□□□□ -2.17
VPS53-208ENST00000570650 KRTAP21-2Q3LI59 83 aa1.51□□□□□ -2.17
VPS53-208ENST00000570650 PRR15LQ9BU68 103 aa1.47□□□□□ -2.17
VPS53-208ENST00000570650 H7BZZ5 65 aa1.45□□□□□ -2.18
VPS53-208ENST00000570650 BRK1Q8WUW1 75 aa1.44□□□□□ -2.18
VPS53-208ENST00000570650 K7ERU9 68 aa1.43□□□□□ -2.18
VPS53-208ENST00000570650 ROMO1P60602 79 aa1.38□□□□□ -2.19
VPS53-208ENST00000570650 TMEM258P61165 79 aa1.37□□□□□ -2.19
VPS53-208ENST00000570650 PHGR1C9JFL3 82 aa1.36□□□□□ -2.19
VPS53-208ENST00000570650 UQCR11O14957 56 aa1.35□□□□□ -2.19
VPS53-208ENST00000570650 CCDC179H3BU77 68 aa1.34□□□□□ -2.19
VPS53-208ENST00000570650 COX7CP15954 63 aa1.32□□□□□ -2.2
VPS53-208ENST00000570650 LINC01558Q9Y6Z2 57 aa1.32□□□□□ -2.2
VPS53-208ENST00000570650 Q1T7F1 81 aa1.31□□□□□ -2.2
VPS53-208ENST00000570650 MIR22HGQ0VDD5 57 aa1.3□□□□□ -2.2
VPS53-208ENST00000570650 CDC42SE1Q9NRR8 79 aa1.23□□□□□ -2.21
VPS53-208ENST00000570650 ATP5EP56381 51 aaPredicted RBP1.19□□□□□ -2.22
VPS53-208ENST00000570650 INE1O15225 51 aa1.17□□□□□ -2.22
VPS53-208ENST00000570650 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
VPS53-208ENST00000570650 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
VPS53-208ENST00000570650 PRM1P04553 51 aa0.59□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 38.5 ms