RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MUC12Q9UKN1 5478 aa6.86□□□□□ -1.31
CLN3-230ENST00000568076 KRTAP19-3Q7Z4W3 81 aa6.8□□□□□ -1.32
CLN3-230ENST00000568076 KRTAP4-3Q9BYR4 195 aa6.77□□□□□ -1.33
CLN3-230ENST00000568076 MT1MQ8N339 61 aa6.75□□□□□ -1.33
CLN3-230ENST00000568076 MT1GP13640 62 aa6.73□□□□□ -1.33
CLN3-230ENST00000568076 CRCT1Q9UGL9 99 aa6.7□□□□□ -1.34
CLN3-230ENST00000568076 SPRR2FQ96RM1 72 aa6.69□□□□□ -1.34
CLN3-230ENST00000568076 MACF1Q9UPN3 7388 aaKnown RBP6.69□□□□□ -1.34
CLN3-230ENST00000568076 INE1O15225 51 aa6.66□□□□□ -1.34
CLN3-230ENST00000568076 KRTAP2-3P0C7H8 128 aa6.66□□□□□ -1.34
CLN3-230ENST00000568076 KRTAP2-4Q9BYR9 128 aa6.66□□□□□ -1.34
CLN3-230ENST00000568076 KRTAP2-1Q9BYU5 128 aa6.66□□□□□ -1.34
CLN3-230ENST00000568076 LOC100996750A0A140TA64 210 aa6.65□□□□□ -1.34
CLN3-230ENST00000568076 LCE5AQ5TCM9 118 aa6.62□□□□□ -1.35
CLN3-230ENST00000568076 SYNE2Q8WXH0 6885 aaKnown RBP6.5□□□□□ -1.37
CLN3-230ENST00000568076 KRTAP9-6A0A140TA67 174 aa6.48□□□□□ -1.37
CLN3-230ENST00000568076 KRTAP5-9P26371 169 aa6.41□□□□□ -1.38
CLN3-230ENST00000568076 MDN1Q9NU22 5596 aa6.4□□□□□ -1.38
CLN3-230ENST00000568076 DSTQ03001 7570 aaKnown RBP6.38□□□□□ -1.39
CLN3-230ENST00000568076 LCE1AQ5T7P2 110 aa6.34□□□□□ -1.39
CLN3-230ENST00000568076 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.22□□□□□ -1.41
CLN3-230ENST00000568076 SPRR2EP22531 72 aa6.2□□□□□ -1.42
CLN3-230ENST00000568076 SPRR2BP35325 72 aa6.2□□□□□ -1.42
CLN3-230ENST00000568076 SPRR2AP35326 72 aa6.2□□□□□ -1.42
CLN3-230ENST00000568076 KRTAP6-1Q3LI64 71 aa6.05□□□□□ -1.44
CLN3-230ENST00000568076 KRTAP6-3Q3LI67 103 aa6.05□□□□□ -1.44
CLN3-230ENST00000568076 KRTAP5-5Q701N2 237 aaPredicted RBP6.04□□□□□ -1.44
CLN3-230ENST00000568076 MT1AP04731 61 aa6□□□□□ -1.45
CLN3-230ENST00000568076 LCE3BQ5TA77 95 aa6□□□□□ -1.45
CLN3-230ENST00000568076 SPRR2DP22532 72 aa5.94□□□□□ -1.46
CLN3-230ENST00000568076 KRTAP9-7A8MTY7 169 aa5.87□□□□□ -1.47
CLN3-230ENST00000568076 KRTAP4-9Q9BYQ8 210 aa5.84□□□□□ -1.48
CLN3-230ENST00000568076 SYNE1Q8NF91 8797 aaKnown RBP5.81□□□□□ -1.48
CLN3-230ENST00000568076 KRTAP12-4P60329 112 aa5.77□□□□□ -1.49
CLN3-230ENST00000568076 NEBP20929 6669 aa5.74□□□□□ -1.49
CLN3-230ENST00000568076 KRTAP9-4Q9BYQ2 154 aa5.68□□□□□ -1.5
CLN3-230ENST00000568076 LCE3DQ9BYE3 92 aa5.56□□□□□ -1.52
CLN3-230ENST00000568076 KRTAP5-4Q6L8H1 288 aa5.48□□□□□ -1.53
CLN3-230ENST00000568076 KRTAP6-2Q3LI66 62 aa5.47□□□□□ -1.53
CLN3-230ENST00000568076 LCE3EQ5T5B0 92 aa5.46□□□□□ -1.54
CLN3-230ENST00000568076 MT3P25713 68 aa5.4□□□□□ -1.55
CLN3-230ENST00000568076 KRTAP4-6Q9BYQ5 205 aa5.26□□□□□ -1.57
CLN3-230ENST00000568076 MT4P47944 62 aa5.22□□□□□ -1.57
CLN3-230ENST00000568076 KRTAP20-1Q3LI63 56 aa5.19□□□□□ -1.58
CLN3-230ENST00000568076 LCE4AQ5TA78 99 aa5.19□□□□□ -1.58
CLN3-230ENST00000568076 KRTAP2-2Q9BYT5 123 aa5.16□□□□□ -1.58
CLN3-230ENST00000568076 OBSCNQ5VST9 7968 aa5.14□□□□□ -1.59
CLN3-230ENST00000568076 KRTAP20-2Q3LI61 65 aa5.13□□□□□ -1.59
CLN3-230ENST00000568076 PRM1P04553 51 aa5.06□□□□□ -1.6
CLN3-230ENST00000568076 KRTAP5-2Q701N4 177 aa5.06□□□□□ -1.6
CLN3-230ENST00000568076 HMCN1Q96RW7 5635 aa5.04□□□□□ -1.6
CLN3-230ENST00000568076 LCE1DQ5T752 114 aa5.02□□□□□ -1.61
CLN3-230ENST00000568076 KRTAP5-3Q6L8H2 238 aa4.93□□□□□ -1.62
CLN3-230ENST00000568076 GPR98Q8WXG9 6306 aa4.67□□□□□ -1.66
CLN3-230ENST00000568076 LCE1EQ5T753 118 aa4.53□□□□□ -1.68
CLN3-230ENST00000568076 MUC5ACP98088 5654 aa4.51□□□□□ -1.69
CLN3-230ENST00000568076 LCE1BQ5T7P3 118 aa4.38□□□□□ -1.71
CLN3-230ENST00000568076 KRTAP5-1Q6L8H4 278 aa4.34□□□□□ -1.71
CLN3-230ENST00000568076 KRTAP5-10Q6L8G5 202 aa4.33□□□□□ -1.72
CLN3-230ENST00000568076 KRTAP4-11Q9BYQ6 195 aa4.32□□□□□ -1.72
CLN3-230ENST00000568076 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
CLN3-230ENST00000568076 AHNAK2Q8IVF2 5795 aa4.29□□□□□ -1.72
CLN3-230ENST00000568076 LCE1CQ5T751 118 aa4.27□□□□□ -1.73
CLN3-230ENST00000568076 KRTAP5-8O75690 187 aa4.16□□□□□ -1.74
CLN3-230ENST00000568076 KRTAP5-7Q6L8G8 165 aa4.07□□□□□ -1.76
CLN3-230ENST00000568076 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.02□□□□□ -1.77
CLN3-230ENST00000568076 KRTAP21-2Q3LI59 83 aa3.93□□□□□ -1.78
CLN3-230ENST00000568076 KRTAP5-11Q6L8G4 156 aa3.71□□□□□ -1.82
CLN3-230ENST00000568076 MUC5BQ9HC84 5762 aaPredicted RBP3.65□□□□□ -1.82
CLN3-230ENST00000568076 KRTAP9-9Q9BYP9 154 aa3.6□□□□□ -1.83
CLN3-230ENST00000568076 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
CLN3-230ENST00000568076 AHNAKQ09666 5890 aaKnown RBP3.54□□□□□ -1.84
CLN3-230ENST00000568076 KRTAP4-12Q9BQ66 201 aa3.51□□□□□ -1.85
CLN3-230ENST00000568076 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
CLN3-230ENST00000568076 PHGR1C9JFL3 82 aa3.2□□□□□ -1.9
CLN3-230ENST00000568076 KRTAP21-1Q3LI58 79 aa3.16□□□□□ -1.9
CLN3-230ENST00000568076 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
CLN3-230ENST00000568076 MUC16Q8WXI7 14507 aa2.08□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 58.1 ms