RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 MT1LQ93083 61 aa5.8□□□□□ -1.48
CMTM3-213ENST00000566756 KRTAP2-3P0C7H8 128 aa5.77□□□□□ -1.49
CMTM3-213ENST00000566756 KRTAP2-4Q9BYR9 128 aa5.77□□□□□ -1.49
CMTM3-213ENST00000566756 KRTAP2-1Q9BYU5 128 aa5.77□□□□□ -1.49
CMTM3-213ENST00000566756 KRTAP4-7Q9BYR0 210 aa5.71□□□□□ -1.5
CMTM3-213ENST00000566756 MACF1Q9UPN3 7388 aaKnown RBP5.7□□□□□ -1.5
CMTM3-213ENST00000566756 SPRR2FQ96RM1 72 aa5.61□□□□□ -1.51
CMTM3-213ENST00000566756 KRTAP19-3Q7Z4W3 81 aa5.59□□□□□ -1.51
CMTM3-213ENST00000566756 KRTAP5-9P26371 169 aa5.57□□□□□ -1.52
CMTM3-213ENST00000566756 MT1GP13640 62 aa5.56□□□□□ -1.52
CMTM3-213ENST00000566756 KRTAP9-6A0A140TA67 174 aa5.55□□□□□ -1.52
CMTM3-213ENST00000566756 MUC12Q9UKN1 5478 aa5.5□□□□□ -1.53
CMTM3-213ENST00000566756 SYNE2Q8WXH0 6885 aaKnown RBP5.5□□□□□ -1.53
CMTM3-213ENST00000566756 LCE5AQ5TCM9 118 aa5.49□□□□□ -1.53
CMTM3-213ENST00000566756 MT1MQ8N339 61 aa5.48□□□□□ -1.53
CMTM3-213ENST00000566756 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.46□□□□□ -1.54
CMTM3-213ENST00000566756 KRTAP6-3Q3LI67 103 aa5.4□□□□□ -1.54
CMTM3-213ENST00000566756 LCE1AQ5T7P2 110 aa5.38□□□□□ -1.55
CMTM3-213ENST00000566756 KRTAP4-3Q9BYR4 195 aa5.35□□□□□ -1.55
CMTM3-213ENST00000566756 LOC100996750A0A140TA64 210 aa5.32□□□□□ -1.56
CMTM3-213ENST00000566756 SPRR2EP22531 72 aa5.29□□□□□ -1.56
CMTM3-213ENST00000566756 SPRR2BP35325 72 aa5.29□□□□□ -1.56
CMTM3-213ENST00000566756 SPRR2AP35326 72 aa5.29□□□□□ -1.56
CMTM3-213ENST00000566756 MDN1Q9NU22 5596 aa5.23□□□□□ -1.57
CMTM3-213ENST00000566756 DSTQ03001 7570 aaKnown RBP5.13□□□□□ -1.59
CMTM3-213ENST00000566756 KRTAP9-7A8MTY7 169 aa5.11□□□□□ -1.59
CMTM3-213ENST00000566756 SPRR2DP22532 72 aa5.09□□□□□ -1.59
CMTM3-213ENST00000566756 KRTAP12-4P60329 112 aa5.02□□□□□ -1.61
CMTM3-213ENST00000566756 MT1AP04731 61 aa4.97□□□□□ -1.61
CMTM3-213ENST00000566756 NEBP20929 6669 aa4.97□□□□□ -1.61
CMTM3-213ENST00000566756 KRTAP5-5Q701N2 237 aaPredicted RBP4.95□□□□□ -1.62
CMTM3-213ENST00000566756 LCE3BQ5TA77 95 aa4.91□□□□□ -1.62
CMTM3-213ENST00000566756 KRTAP6-1Q3LI64 71 aa4.87□□□□□ -1.63
CMTM3-213ENST00000566756 KRTAP4-9Q9BYQ8 210 aa4.75□□□□□ -1.65
CMTM3-213ENST00000566756 LCE3DQ9BYE3 92 aa4.74□□□□□ -1.65
CMTM3-213ENST00000566756 LCE3EQ5T5B0 92 aa4.7□□□□□ -1.66
CMTM3-213ENST00000566756 SYNE1Q8NF91 8797 aaKnown RBP4.69□□□□□ -1.66
CMTM3-213ENST00000566756 KRTAP5-4Q6L8H1 288 aa4.69□□□□□ -1.66
CMTM3-213ENST00000566756 KRTAP9-4Q9BYQ2 154 aa4.63□□□□□ -1.67
CMTM3-213ENST00000566756 KRTAP2-2Q9BYT5 123 aa4.6□□□□□ -1.67
CMTM3-213ENST00000566756 LCE4AQ5TA78 99 aa4.56□□□□□ -1.68
CMTM3-213ENST00000566756 KRTAP20-1Q3LI63 56 aa4.54□□□□□ -1.68
CMTM3-213ENST00000566756 MT3P25713 68 aa4.44□□□□□ -1.7
CMTM3-213ENST00000566756 PRM1P04553 51 aa4.42□□□□□ -1.7
CMTM3-213ENST00000566756 KRTAP6-2Q3LI66 62 aa4.41□□□□□ -1.7
CMTM3-213ENST00000566756 KRTAP4-6Q9BYQ5 205 aa4.41□□□□□ -1.7
CMTM3-213ENST00000566756 MT4P47944 62 aa4.4□□□□□ -1.71
CMTM3-213ENST00000566756 KRTAP20-2Q3LI61 65 aa4.35□□□□□ -1.71
CMTM3-213ENST00000566756 LCE1DQ5T752 114 aa4.33□□□□□ -1.72
CMTM3-213ENST00000566756 KRTAP5-2Q701N4 177 aa4.27□□□□□ -1.73
CMTM3-213ENST00000566756 HMCN1Q96RW7 5635 aa4.24□□□□□ -1.73
CMTM3-213ENST00000566756 KRTAP5-3Q6L8H2 238 aa4.2□□□□□ -1.74
CMTM3-213ENST00000566756 OBSCNQ5VST9 7968 aa4.06□□□□□ -1.76
CMTM3-213ENST00000566756 LCE1EQ5T753 118 aa3.83□□□□□ -1.8
CMTM3-213ENST00000566756 KRTAP4-11Q9BYQ6 195 aa3.74□□□□□ -1.81
CMTM3-213ENST00000566756 AHNAK2Q8IVF2 5795 aa3.68□□□□□ -1.82
CMTM3-213ENST00000566756 KRTAP5-1Q6L8H4 278 aa3.67□□□□□ -1.82
CMTM3-213ENST00000566756 KRTAP5-10Q6L8G5 202 aa3.62□□□□□ -1.83
CMTM3-213ENST00000566756 KRTAP5-8O75690 187 aa3.61□□□□□ -1.83
CMTM3-213ENST00000566756 MUC5ACP98088 5654 aa3.58□□□□□ -1.84
CMTM3-213ENST00000566756 LCE1CQ5T751 118 aa3.57□□□□□ -1.84
CMTM3-213ENST00000566756 LCE1BQ5T7P3 118 aa3.57□□□□□ -1.84
CMTM3-213ENST00000566756 KRTAP5-7Q6L8G8 165 aa3.55□□□□□ -1.84
CMTM3-213ENST00000566756 KRTAP4-2Q9BYR5 136 aa3.55□□□□□ -1.84
CMTM3-213ENST00000566756 KRTAP4-12Q9BQ66 201 aa3.52□□□□□ -1.85
CMTM3-213ENST00000566756 GPR98Q8WXG9 6306 aa3.42□□□□□ -1.86
CMTM3-213ENST00000566756 KRTAP9-9Q9BYP9 154 aa3.4□□□□□ -1.86
CMTM3-213ENST00000566756 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.37□□□□□ -1.87
CMTM3-213ENST00000566756 KRTAP21-2Q3LI59 83 aa3.18□□□□□ -1.9
CMTM3-213ENST00000566756 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
CMTM3-213ENST00000566756 MUC5BQ9HC84 5762 aaPredicted RBP3.02□□□□□ -1.93
CMTM3-213ENST00000566756 KRTAP21-1Q3LI58 79 aa2.87□□□□□ -1.95
CMTM3-213ENST00000566756 AHNAKQ09666 5890 aaKnown RBP2.82□□□□□ -1.96
CMTM3-213ENST00000566756 LCE1FQ5T754 118 aa2.81□□□□□ -1.96
CMTM3-213ENST00000566756 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
CMTM3-213ENST00000566756 PHGR1C9JFL3 82 aa2.69□□□□□ -1.98
CMTM3-213ENST00000566756 MUC19Q7Z5P9 8384 aa2.47□□□□□ -2.01
CMTM3-213ENST00000566756 MUC16Q8WXI7 14507 aa1.78□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 86.5 ms