RNA–Protein interactions for RNA: ENST00000566510.5

CDH1-209, Transcript of cadherin 1, humanhuman

TSL 5

Gene CDH1, Length 2,661 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-209ENST00000566510 LCE4AQ5TA78 99 aa4.82□□□□□ -1.64
CDH1-209ENST00000566510 KRTAP19-4Q3LI73 84 aa4.79□□□□□ -1.64
CDH1-209ENST00000566510 KRTAP9-9Q9BYP9 154 aa4.71□□□□□ -1.65
CDH1-209ENST00000566510 KRTAP9-4Q9BYQ2 154 aa4.71□□□□□ -1.65
CDH1-209ENST00000566510 LOC100996750A0A140TA64 210 aa4.7□□□□□ -1.66
CDH1-209ENST00000566510 KRTAP4-3Q9BYR4 195 aa4.7□□□□□ -1.66
CDH1-209ENST00000566510 KRTAP19-6Q3LI70 58 aa4.69□□□□□ -1.66
CDH1-209ENST00000566510 KRTAP9-6A0A140TA67 174 aa4.69□□□□□ -1.66
CDH1-209ENST00000566510 KRTAP9-7A8MTY7 169 aa4.69□□□□□ -1.66
CDH1-209ENST00000566510 FCGBPQ9Y6R7 5405 aaPredicted RBP4.68□□□□□ -1.66
CDH1-209ENST00000566510 MUC12Q9UKN1 5478 aa4.67□□□□□ -1.66
CDH1-209ENST00000566510 MT1GP13640 62 aa4.65□□□□□ -1.66
CDH1-209ENST00000566510 CRCT1Q9UGL9 99 aa4.64□□□□□ -1.67
CDH1-209ENST00000566510 DSTQ03001 7570 aaKnown RBP4.57□□□□□ -1.68
CDH1-209ENST00000566510 MT1MQ8N339 61 aa4.56□□□□□ -1.68
CDH1-209ENST00000566510 KRTAP19-3Q7Z4W3 81 aa4.55□□□□□ -1.68
CDH1-209ENST00000566510 LCE5AQ5TCM9 118 aa4.52□□□□□ -1.69
CDH1-209ENST00000566510 SPRR2FQ96RM1 72 aa4.43□□□□□ -1.7
CDH1-209ENST00000566510 KRTAP12-4P60329 112 aa4.4□□□□□ -1.71
CDH1-209ENST00000566510 LCE3BQ5TA77 95 aa4.34□□□□□ -1.72
CDH1-209ENST00000566510 MACF1Q9UPN3 7388 aaKnown RBP4.32□□□□□ -1.72
CDH1-209ENST00000566510 KRTAP4-9Q9BYQ8 210 aa4.26□□□□□ -1.73
CDH1-209ENST00000566510 SYNE1Q8NF91 8797 aaKnown RBP4.26□□□□□ -1.73
CDH1-209ENST00000566510 SYNE2Q8WXH0 6885 aaKnown RBP4.21□□□□□ -1.73
CDH1-209ENST00000566510 MDN1Q9NU22 5596 aa4.19□□□□□ -1.74
CDH1-209ENST00000566510 KRTAP6-1Q3LI64 71 aa4.18□□□□□ -1.74
CDH1-209ENST00000566510 KRTAP4-12Q9BQ66 201 aa4.16□□□□□ -1.74
CDH1-209ENST00000566510 MT1AP04731 61 aa4.09□□□□□ -1.75
CDH1-209ENST00000566510 LCE3DQ9BYE3 92 aa4.08□□□□□ -1.76
CDH1-209ENST00000566510 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.07□□□□□ -1.76
CDH1-209ENST00000566510 LCE1AQ5T7P2 110 aa4.05□□□□□ -1.76
CDH1-209ENST00000566510 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
CDH1-209ENST00000566510 KRTAP9-2Q9BYQ4 174 aa4.03□□□□□ -1.76
CDH1-209ENST00000566510 LCE3EQ5T5B0 92 aa4.01□□□□□ -1.77
CDH1-209ENST00000566510 SPRR2EP22531 72 aa3.99□□□□□ -1.77
CDH1-209ENST00000566510 SPRR2BP35325 72 aa3.99□□□□□ -1.77
CDH1-209ENST00000566510 SPRR2AP35326 72 aa3.99□□□□□ -1.77
CDH1-209ENST00000566510 KRTAP2-2Q9BYT5 123 aa3.99□□□□□ -1.77
CDH1-209ENST00000566510 KRTAP5-5Q701N2 237 aaPredicted RBP3.96□□□□□ -1.78
CDH1-209ENST00000566510 KRTAP4-6Q9BYQ5 205 aa3.95□□□□□ -1.78
CDH1-209ENST00000566510 KRTAP5-9P26371 169 aa3.94□□□□□ -1.78
CDH1-209ENST00000566510 OBSCNQ5VST9 7968 aa3.94□□□□□ -1.78
CDH1-209ENST00000566510 PRM1P04553 51 aa3.9□□□□□ -1.79
CDH1-209ENST00000566510 SPRR2DP22532 72 aa3.8□□□□□ -1.8
CDH1-209ENST00000566510 KRTAP6-2Q3LI66 62 aa3.76□□□□□ -1.81
CDH1-209ENST00000566510 MT3P25713 68 aa3.69□□□□□ -1.82
CDH1-209ENST00000566510 KRTAP6-3Q3LI67 103 aa3.59□□□□□ -1.83
CDH1-209ENST00000566510 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
CDH1-209ENST00000566510 LCE1DQ5T752 114 aa3.52□□□□□ -1.85
CDH1-209ENST00000566510 MT4P47944 62 aa3.42□□□□□ -1.86
CDH1-209ENST00000566510 KRTAP5-4Q6L8H1 288 aa3.42□□□□□ -1.86
CDH1-209ENST00000566510 KRTAP4-11Q9BYQ6 195 aa3.4□□□□□ -1.86
CDH1-209ENST00000566510 NEBP20929 6669 aa3.29□□□□□ -1.88
CDH1-209ENST00000566510 KRTAP20-2Q3LI61 65 aa3.27□□□□□ -1.89
CDH1-209ENST00000566510 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
CDH1-209ENST00000566510 KRTAP5-2Q701N4 177 aa3.21□□□□□ -1.9
CDH1-209ENST00000566510 HMCN1Q96RW7 5635 aa3.2□□□□□ -1.9
CDH1-209ENST00000566510 MUC5ACP98088 5654 aa3.13□□□□□ -1.91
CDH1-209ENST00000566510 KRTAP5-3Q6L8H2 238 aa3.07□□□□□ -1.92
CDH1-209ENST00000566510 LCE1BQ5T7P3 118 aa3.06□□□□□ -1.92
CDH1-209ENST00000566510 KRTAP20-1Q3LI63 56 aa3.03□□□□□ -1.92
CDH1-209ENST00000566510 KRTAP5-10Q6L8G5 202 aa2.92□□□□□ -1.94
CDH1-209ENST00000566510 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
CDH1-209ENST00000566510 LCE1CQ5T751 118 aa2.79□□□□□ -1.96
CDH1-209ENST00000566510 KRTAP21-2Q3LI59 83 aa2.66□□□□□ -1.98
CDH1-209ENST00000566510 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.59□□□□□ -1.99
CDH1-209ENST00000566510 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
CDH1-209ENST00000566510 KRTAP5-8O75690 187 aa2.55□□□□□ -2
CDH1-209ENST00000566510 MUC19Q7Z5P9 8384 aa2.5□□□□□ -2.01
CDH1-209ENST00000566510 KRTAP5-11Q6L8G4 156 aa2.48□□□□□ -2.01
CDH1-209ENST00000566510 AHNAK2Q8IVF2 5795 aa2.46□□□□□ -2.02
CDH1-209ENST00000566510 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
CDH1-209ENST00000566510 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.02
CDH1-209ENST00000566510 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
CDH1-209ENST00000566510 GPR98Q8WXG9 6306 aa2.27□□□□□ -2.05
CDH1-209ENST00000566510 PHGR1C9JFL3 82 aa2.07□□□□□ -2.08
CDH1-209ENST00000566510 AHNAKQ09666 5890 aaKnown RBP1.8□□□□□ -2.12
CDH1-209ENST00000566510 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 166.9 ms