RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KRTAP19-5Q3LI72 72 aa4.91□□□□□ -1.62
CLK3-216ENST00000564468 LCE5AQ5TCM9 118 aa4.91□□□□□ -1.62
CLK3-216ENST00000564468 KRTAP4-9Q9BYQ8 210 aa4.91□□□□□ -1.62
CLK3-216ENST00000564468 K7ERS5 55 aa4.87□□□□□ -1.63
CLK3-216ENST00000564468 Q1T7F1 81 aa4.87□□□□□ -1.63
CLK3-216ENST00000564468 MT1GP13640 62 aa4.85□□□□□ -1.63
CLK3-216ENST00000564468 LCE3AQ5TA76 89 aa4.85□□□□□ -1.63
CLK3-216ENST00000564468 PSPHP1O15172 72 aa4.84□□□□□ -1.63
CLK3-216ENST00000564468 PP632Q6XCG6 107 aa4.84□□□□□ -1.63
CLK3-216ENST00000564468 KRTAP23-1A1A580 65 aa4.78□□□□□ -1.64
CLK3-216ENST00000564468 LCE1DQ5T752 114 aa4.76□□□□□ -1.65
CLK3-216ENST00000564468 MT1LQ93083 61 aa4.76□□□□□ -1.65
CLK3-216ENST00000564468 KRTAP25-1Q3LHN0 102 aa4.75□□□□□ -1.65
CLK3-216ENST00000564468 MT1MQ8N339 61 aa4.73□□□□□ -1.65
CLK3-216ENST00000564468 HMCN1Q96RW7 5635 aa4.72□□□□□ -1.65
CLK3-216ENST00000564468 A6NED7 52 aa4.71□□□□□ -1.66
CLK3-216ENST00000564468 RPS28P62857 69 aaKnown RBP4.71□□□□□ -1.66
CLK3-216ENST00000564468 KRTAP12-3P60328 96 aa4.7□□□□□ -1.66
CLK3-216ENST00000564468 LCE4AQ5TA78 99 aa4.68□□□□□ -1.66
CLK3-216ENST00000564468 A0A0A0MQY5 61 aa4.67□□□□□ -1.66
CLK3-216ENST00000564468 MT4P47944 62 aa4.67□□□□□ -1.66
CLK3-216ENST00000564468 AHNAK2Q8IVF2 5795 aa4.67□□□□□ -1.66
CLK3-216ENST00000564468 KRTAP5-10Q6L8G5 202 aa4.62□□□□□ -1.67
CLK3-216ENST00000564468 CDC42SE1Q9NRR8 79 aa4.58□□□□□ -1.68
CLK3-216ENST00000564468 KRTAP4-3Q9BYR4 195 aa4.56□□□□□ -1.68
CLK3-216ENST00000564468 KRTAP19-4Q3LI73 84 aa4.53□□□□□ -1.68
CLK3-216ENST00000564468 KRTAP5-7Q6L8G8 165 aa4.52□□□□□ -1.69
CLK3-216ENST00000564468 ROMO1P60602 79 aa4.49□□□□□ -1.69
CLK3-216ENST00000564468 KRTAP4-7Q9BYR0 210 aa4.49□□□□□ -1.69
CLK3-216ENST00000564468 KRTAP5-4Q6L8H1 288 aa4.47□□□□□ -1.69
CLK3-216ENST00000564468 KRTAP15-1Q3LI76 137 aa4.44□□□□□ -1.7
CLK3-216ENST00000564468 KRTAP5-3Q6L8H2 238 aa4.43□□□□□ -1.7
CLK3-216ENST00000564468 SPRR5A0A1B0GTR4 108 aa4.38□□□□□ -1.71
CLK3-216ENST00000564468 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.71
CLK3-216ENST00000564468 KRTAP5-5Q701N2 237 aaPredicted RBP4.31□□□□□ -1.72
CLK3-216ENST00000564468 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
CLK3-216ENST00000564468 KRTAP20-2Q3LI61 65 aa4.25□□□□□ -1.73
CLK3-216ENST00000564468 BRK1Q8WUW1 75 aa4.13□□□□□ -1.75
CLK3-216ENST00000564468 KRTAP9-9Q9BYP9 154 aa4.12□□□□□ -1.75
CLK3-216ENST00000564468 KRTAP9-4Q9BYQ2 154 aa4.12□□□□□ -1.75
CLK3-216ENST00000564468 MT1AP04731 61 aa4.07□□□□□ -1.76
CLK3-216ENST00000564468 KRTAP4-12Q9BQ66 201 aa4.07□□□□□ -1.76
CLK3-216ENST00000564468 SYNE1Q8NF91 8797 aaKnown RBP4.06□□□□□ -1.76
CLK3-216ENST00000564468 AHNAKQ09666 5890 aaKnown RBP4.05□□□□□ -1.76
CLK3-216ENST00000564468 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
CLK3-216ENST00000564468 KRTAP6-1Q3LI64 71 aa4.02□□□□□ -1.77
CLK3-216ENST00000564468 KRTAP4-11Q9BYQ6 195 aa4.01□□□□□ -1.77
CLK3-216ENST00000564468 MUC5ACP98088 5654 aa3.98□□□□□ -1.77
CLK3-216ENST00000564468 MUC5BQ9HC84 5762 aaPredicted RBP3.96□□□□□ -1.78
CLK3-216ENST00000564468 PRO0628Q9UI54 55 aa3.96□□□□□ -1.78
CLK3-216ENST00000564468 KRTAP5-2Q701N4 177 aa3.91□□□□□ -1.78
CLK3-216ENST00000564468 PMAIP1Q13794 54 aa3.9□□□□□ -1.79
CLK3-216ENST00000564468 PRAC1Q96KF2 57 aa3.89□□□□□ -1.79
CLK3-216ENST00000564468 KRTAP5-8O75690 187 aa3.86□□□□□ -1.79
CLK3-216ENST00000564468 KRTAP4-2Q9BYR5 136 aa3.84□□□□□ -1.79
CLK3-216ENST00000564468 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
CLK3-216ENST00000564468 OBSCNQ5VST9 7968 aa3.77□□□□□ -1.81
CLK3-216ENST00000564468 MT3P25713 68 aa3.75□□□□□ -1.81
CLK3-216ENST00000564468 KTN1-AS1Q86SY8 53 aa3.66□□□□□ -1.82
CLK3-216ENST00000564468 NDUFAF8A1L188 74 aa3.59□□□□□ -1.83
CLK3-216ENST00000564468 KRTAP5-1Q6L8H4 278 aa3.51□□□□□ -1.85
CLK3-216ENST00000564468 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
CLK3-216ENST00000564468 LUZP6Q538Z0 58 aa3.21□□□□□ -1.9
CLK3-216ENST00000564468 LCE1BQ5T7P3 118 aa3.18□□□□□ -1.9
CLK3-216ENST00000564468 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
CLK3-216ENST00000564468 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
CLK3-216ENST00000564468 LCE3EQ5T5B0 92 aa3□□□□□ -1.93
CLK3-216ENST00000564468 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
CLK3-216ENST00000564468 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.89□□□□□ -1.95
CLK3-216ENST00000564468 KRTAP5-11Q6L8G4 156 aa2.85□□□□□ -1.95
CLK3-216ENST00000564468 PHGR1C9JFL3 82 aa2.74□□□□□ -1.97
CLK3-216ENST00000564468 KRTAP21-2Q3LI59 83 aa2.64□□□□□ -1.99
CLK3-216ENST00000564468 INE1O15225 51 aa2.46□□□□□ -2.02
CLK3-216ENST00000564468 KRTAP4-4Q9BYR3 166 aa2.38□□□□□ -2.03
CLK3-216ENST00000564468 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
CLK3-216ENST00000564468 PRM1P04553 51 aa2.27□□□□□ -2.05
CLK3-216ENST00000564468 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
CLK3-216ENST00000564468 MUC16Q8WXI7 14507 aa1.6□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 68.4 ms