RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 MT1GP13640 62 aa3.54□□□□□ -1.84
RNF40-204ENST00000563683 MT1LQ93083 61 aa3.52□□□□□ -1.85
RNF40-204ENST00000563683 MT1EP04732 61 aa3.51□□□□□ -1.85
RNF40-204ENST00000563683 KRTAP19-7Q3SYF9 63 aa3.49□□□□□ -1.85
RNF40-204ENST00000563683 DSTQ03001 7570 aaKnown RBP3.49□□□□□ -1.85
RNF40-204ENST00000563683 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
RNF40-204ENST00000563683 FCGBPQ9Y6R7 5405 aaPredicted RBP3.42□□□□□ -1.86
RNF40-204ENST00000563683 LOC100996750A0A140TA64 210 aa3.41□□□□□ -1.86
RNF40-204ENST00000563683 KRTAP19-6Q3LI70 58 aa3.4□□□□□ -1.86
RNF40-204ENST00000563683 LCE3BQ5TA77 95 aa3.4□□□□□ -1.87
RNF40-204ENST00000563683 KRTAP19-3Q7Z4W3 81 aa3.39□□□□□ -1.87
RNF40-204ENST00000563683 SPRR2EP22531 72 aa3.39□□□□□ -1.87
RNF40-204ENST00000563683 SPRR2BP35325 72 aa3.39□□□□□ -1.87
RNF40-204ENST00000563683 SPRR2AP35326 72 aa3.39□□□□□ -1.87
RNF40-204ENST00000563683 KRTAP12-4P60329 112 aa3.35□□□□□ -1.87
RNF40-204ENST00000563683 MT1MQ8N339 61 aa3.33□□□□□ -1.88
RNF40-204ENST00000563683 MUC12Q9UKN1 5478 aa3.29□□□□□ -1.88
RNF40-204ENST00000563683 KRTAP9-2Q9BYQ4 174 aa3.27□□□□□ -1.89
RNF40-204ENST00000563683 SSPOA2VEC9 5147 aa3.27□□□□□ -1.89
RNF40-204ENST00000563683 SYNE2Q8WXH0 6885 aaKnown RBP3.26□□□□□ -1.89
RNF40-204ENST00000563683 SPRR2DP22532 72 aa3.25□□□□□ -1.89
RNF40-204ENST00000563683 LCE3DQ9BYE3 92 aa3.15□□□□□ -1.9
RNF40-204ENST00000563683 KRTAP9-6A0A140TA67 174 aa3.14□□□□□ -1.91
RNF40-204ENST00000563683 KRTAP4-9Q9BYQ8 210 aa3.13□□□□□ -1.91
RNF40-204ENST00000563683 MACF1Q9UPN3 7388 aaKnown RBP3.13□□□□□ -1.91
RNF40-204ENST00000563683 LCE3EQ5T5B0 92 aa3.09□□□□□ -1.92
RNF40-204ENST00000563683 LCE5AQ5TCM9 118 aa3.08□□□□□ -1.92
RNF40-204ENST00000563683 MT1AP04731 61 aa3.06□□□□□ -1.92
RNF40-204ENST00000563683 KRTAP6-1Q3LI64 71 aa3.01□□□□□ -1.93
RNF40-204ENST00000563683 LCE1AQ5T7P2 110 aa2.97□□□□□ -1.93
RNF40-204ENST00000563683 PRM1P04553 51 aa2.95□□□□□ -1.94
RNF40-204ENST00000563683 MT4P47944 62 aa2.93□□□□□ -1.94
RNF40-204ENST00000563683 MT3P25713 68 aa2.92□□□□□ -1.94
RNF40-204ENST00000563683 KRTAP9-7A8MTY7 169 aa2.91□□□□□ -1.94
RNF40-204ENST00000563683 MDN1Q9NU22 5596 aa2.89□□□□□ -1.95
RNF40-204ENST00000563683 KRTAP5-5Q701N2 237 aaPredicted RBP2.89□□□□□ -1.95
RNF40-204ENST00000563683 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.87□□□□□ -1.95
RNF40-204ENST00000563683 KRTAP6-3Q3LI67 103 aa2.85□□□□□ -1.95
RNF40-204ENST00000563683 KRTAP6-2Q3LI66 62 aa2.82□□□□□ -1.96
RNF40-204ENST00000563683 KRTAP9-4Q9BYQ2 154 aa2.79□□□□□ -1.96
RNF40-204ENST00000563683 KRTAP5-9P26371 169 aa2.74□□□□□ -1.97
RNF40-204ENST00000563683 LCE1DQ5T752 114 aa2.72□□□□□ -1.97
RNF40-204ENST00000563683 MUC19Q7Z5P9 8384 aa2.72□□□□□ -1.97
RNF40-204ENST00000563683 KRTAP20-1Q3LI63 56 aa2.69□□□□□ -1.98
RNF40-204ENST00000563683 LCE1BQ5T7P3 118 aa2.69□□□□□ -1.98
RNF40-204ENST00000563683 KRTAP4-6Q9BYQ5 205 aa2.68□□□□□ -1.98
RNF40-204ENST00000563683 KRTAP2-2Q9BYT5 123 aa2.64□□□□□ -1.99
RNF40-204ENST00000563683 GPR98Q8WXG9 6306 aa2.61□□□□□ -1.99
RNF40-204ENST00000563683 LCE4AQ5TA78 99 aa2.58□□□□□ -2
RNF40-204ENST00000563683 NEBP20929 6669 aa2.57□□□□□ -2
RNF40-204ENST00000563683 KRTAP20-2Q3LI61 65 aa2.41□□□□□ -2.02
RNF40-204ENST00000563683 LCE1EQ5T753 118 aa2.39□□□□□ -2.03
RNF40-204ENST00000563683 KRTAP4-12Q9BQ66 201 aa2.36□□□□□ -2.03
RNF40-204ENST00000563683 LCE1FQ5T754 118 aa2.31□□□□□ -2.04
RNF40-204ENST00000563683 KRTAP9-9Q9BYP9 154 aa2.31□□□□□ -2.04
RNF40-204ENST00000563683 KRTAP5-4Q6L8H1 288 aa2.27□□□□□ -2.05
RNF40-204ENST00000563683 MUC5ACP98088 5654 aa2.25□□□□□ -2.05
RNF40-204ENST00000563683 KRTAP4-11Q9BYQ6 195 aa2.23□□□□□ -2.05
RNF40-204ENST00000563683 HMCN1Q96RW7 5635 aa2.23□□□□□ -2.05
RNF40-204ENST00000563683 KRTAP5-2Q701N4 177 aa2.14□□□□□ -2.07
RNF40-204ENST00000563683 KRTAP5-10Q6L8G5 202 aa2.11□□□□□ -2.07
RNF40-204ENST00000563683 LCE1CQ5T751 118 aa2.1□□□□□ -2.07
RNF40-204ENST00000563683 KRTAP4-2Q9BYR5 136 aa2.09□□□□□ -2.08
RNF40-204ENST00000563683 KRTAP4-4Q9BYR3 166 aa2.06□□□□□ -2.08
RNF40-204ENST00000563683 KRTAP5-3Q6L8H2 238 aa2.04□□□□□ -2.08
RNF40-204ENST00000563683 KRTAP5-1Q6L8H4 278 aa2.03□□□□□ -2.08
RNF40-204ENST00000563683 AHNAK2Q8IVF2 5795 aa1.96□□□□□ -2.1
RNF40-204ENST00000563683 KRTAP21-1Q3LI58 79 aa1.88□□□□□ -2.11
RNF40-204ENST00000563683 KRTAP5-8O75690 187 aa1.85□□□□□ -2.11
RNF40-204ENST00000563683 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.12
RNF40-204ENST00000563683 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.82□□□□□ -2.12
RNF40-204ENST00000563683 MUC5BQ9HC84 5762 aaPredicted RBP1.79□□□□□ -2.12
RNF40-204ENST00000563683 AHNAKQ09666 5890 aaKnown RBP1.72□□□□□ -2.13
RNF40-204ENST00000563683 KRTAP5-11Q6L8G4 156 aa1.64□□□□□ -2.15
RNF40-204ENST00000563683 KRTAP5-7Q6L8G8 165 aa1.6□□□□□ -2.15
RNF40-204ENST00000563683 PHGR1C9JFL3 82 aa1.43□□□□□ -2.18
RNF40-204ENST00000563683 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 102.7 ms