RNA–Protein interactions for RNA: ENST00000559694.5

CARMIL3-202, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 5

Gene CARMIL3, Length 4,319 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-202ENST00000559694 KRTAP19-3Q7Z4W3 81 aa3.66□□□□□ -1.82
CARMIL3-202ENST00000559694 MT1EP04732 61 aa3.65□□□□□ -1.83
CARMIL3-202ENST00000559694 SYNE1Q8NF91 8797 aaKnown RBP3.63□□□□□ -1.83
CARMIL3-202ENST00000559694 USH2AO75445 5202 aa3.62□□□□□ -1.83
CARMIL3-202ENST00000559694 MT1LQ93083 61 aa3.61□□□□□ -1.83
CARMIL3-202ENST00000559694 KRTAP4-7Q9BYR0 210 aa3.61□□□□□ -1.83
CARMIL3-202ENST00000559694 KRTAP9-7A8MTY7 169 aa3.56□□□□□ -1.84
CARMIL3-202ENST00000559694 KRTAP12-4P60329 112 aa3.55□□□□□ -1.84
CARMIL3-202ENST00000559694 KRTAP19-7Q3SYF9 63 aa3.53□□□□□ -1.84
CARMIL3-202ENST00000559694 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.53□□□□□ -1.85
CARMIL3-202ENST00000559694 MT1MQ8N339 61 aa3.51□□□□□ -1.85
CARMIL3-202ENST00000559694 LCE3BQ5TA77 95 aa3.47□□□□□ -1.85
CARMIL3-202ENST00000559694 KRTAP4-3Q9BYR4 195 aa3.47□□□□□ -1.85
CARMIL3-202ENST00000559694 SYNE2Q8WXH0 6885 aaKnown RBP3.46□□□□□ -1.86
CARMIL3-202ENST00000559694 KRTAP6-3Q3LI67 103 aa3.46□□□□□ -1.86
CARMIL3-202ENST00000559694 FCGBPQ9Y6R7 5405 aaPredicted RBP3.43□□□□□ -1.86
CARMIL3-202ENST00000559694 SSPOA2VEC9 5147 aa3.41□□□□□ -1.86
CARMIL3-202ENST00000559694 DSTQ03001 7570 aaKnown RBP3.41□□□□□ -1.86
CARMIL3-202ENST00000559694 KMT2DO14686 5537 aa3.4□□□□□ -1.87
CARMIL3-202ENST00000559694 OBSCNQ5VST9 7968 aa3.4□□□□□ -1.87
CARMIL3-202ENST00000559694 LOC100996750A0A140TA64 210 aa3.37□□□□□ -1.87
CARMIL3-202ENST00000559694 MT4P47944 62 aa3.35□□□□□ -1.87
CARMIL3-202ENST00000559694 MACF1Q9UPN3 7388 aaKnown RBP3.35□□□□□ -1.87
CARMIL3-202ENST00000559694 LCE1AQ5T7P2 110 aa3.34□□□□□ -1.88
CARMIL3-202ENST00000559694 KRTAP20-1Q3LI63 56 aa3.31□□□□□ -1.88
CARMIL3-202ENST00000559694 KRTAP2-3P0C7H8 128 aa3.27□□□□□ -1.89
CARMIL3-202ENST00000559694 LCE5AQ5TCM9 118 aa3.27□□□□□ -1.89
CARMIL3-202ENST00000559694 KRTAP2-4Q9BYR9 128 aa3.27□□□□□ -1.89
CARMIL3-202ENST00000559694 KRTAP2-1Q9BYU5 128 aa3.27□□□□□ -1.89
CARMIL3-202ENST00000559694 LCE3DQ9BYE3 92 aa3.27□□□□□ -1.89
CARMIL3-202ENST00000559694 MUC12Q9UKN1 5478 aa3.26□□□□□ -1.89
CARMIL3-202ENST00000559694 KRTAP9-6A8MVA2 160 aa3.25□□□□□ -1.89
CARMIL3-202ENST00000559694 LCE3EQ5T5B0 92 aa3.23□□□□□ -1.89
CARMIL3-202ENST00000559694 KRTAP2-2Q9BYT5 123 aa3.17□□□□□ -1.9
CARMIL3-202ENST00000559694 MT3P25713 68 aa3.16□□□□□ -1.9
CARMIL3-202ENST00000559694 MT1AP04731 61 aa3.15□□□□□ -1.9
CARMIL3-202ENST00000559694 KRTAP5-9P26371 169 aa3.15□□□□□ -1.9
CARMIL3-202ENST00000559694 KRTAP4-9Q9BYQ8 210 aa3.13□□□□□ -1.91
CARMIL3-202ENST00000559694 PRM1P04553 51 aa3.12□□□□□ -1.91
CARMIL3-202ENST00000559694 MDN1Q9NU22 5596 aa3.06□□□□□ -1.92
CARMIL3-202ENST00000559694 KRTAP6-1Q3LI64 71 aa3.05□□□□□ -1.92
CARMIL3-202ENST00000559694 LCE4AQ5TA78 99 aa3.03□□□□□ -1.92
CARMIL3-202ENST00000559694 NEBP20929 6669 aa3.02□□□□□ -1.93
CARMIL3-202ENST00000559694 GPR98Q8WXG9 6306 aa2.98□□□□□ -1.93
CARMIL3-202ENST00000559694 LCE1DQ5T752 114 aa2.98□□□□□ -1.93
CARMIL3-202ENST00000559694 KRTAP6-2Q3LI66 62 aa2.96□□□□□ -1.94
CARMIL3-202ENST00000559694 KRTAP9-4Q9BYQ2 154 aa2.94□□□□□ -1.94
CARMIL3-202ENST00000559694 LCE1BQ5T7P3 118 aa2.94□□□□□ -1.94
CARMIL3-202ENST00000559694 KRTAP4-6Q9BYQ5 205 aa2.82□□□□□ -1.96
CARMIL3-202ENST00000559694 KRTAP20-2Q3LI61 65 aa2.71□□□□□ -1.98
CARMIL3-202ENST00000559694 KRTAP5-5Q701N2 237 aaPredicted RBP2.71□□□□□ -1.98
CARMIL3-202ENST00000559694 MUC19Q7Z5P9 8384 aa2.69□□□□□ -1.98
CARMIL3-202ENST00000559694 KRTAP5-4Q6L8H1 288 aa2.55□□□□□ -2
CARMIL3-202ENST00000559694 KRTAP9-9Q9BYP9 154 aa2.52□□□□□ -2.01
CARMIL3-202ENST00000559694 KRTAP4-11Q9BYQ6 195 aa2.46□□□□□ -2.01
CARMIL3-202ENST00000559694 HMCN1Q96RW7 5635 aa2.4□□□□□ -2.02
CARMIL3-202ENST00000559694 KRTAP5-3Q6L8H2 238 aa2.4□□□□□ -2.03
CARMIL3-202ENST00000559694 LCE1CQ5T751 118 aa2.39□□□□□ -2.03
CARMIL3-202ENST00000559694 LCE1EQ5T753 118 aa2.39□□□□□ -2.03
CARMIL3-202ENST00000559694 LCE1FQ5T754 118 aa2.39□□□□□ -2.03
CARMIL3-202ENST00000559694 MUC5ACP98088 5654 aa2.39□□□□□ -2.03
CARMIL3-202ENST00000559694 KRTAP5-2Q701N4 177 aa2.29□□□□□ -2.04
CARMIL3-202ENST00000559694 AHNAK2Q8IVF2 5795 aa2.23□□□□□ -2.05
CARMIL3-202ENST00000559694 KRTAP4-12Q9BQ66 201 aa2.23□□□□□ -2.05
CARMIL3-202ENST00000559694 KRTAP4-2Q9BYR5 136 aa2.23□□□□□ -2.05
CARMIL3-202ENST00000559694 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
CARMIL3-202ENST00000559694 KRTAP4-4Q9BYR3 166 aa2.14□□□□□ -2.07
CARMIL3-202ENST00000559694 KRTAP5-1Q6L8H4 278 aa1.98□□□□□ -2.09
CARMIL3-202ENST00000559694 KRTAP5-10Q6L8G5 202 aa1.96□□□□□ -2.1
CARMIL3-202ENST00000559694 AHNAKQ09666 5890 aaKnown RBP1.9□□□□□ -2.11
CARMIL3-202ENST00000559694 MUC5BQ9HC84 5762 aaPredicted RBP1.87□□□□□ -2.11
CARMIL3-202ENST00000559694 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.85□□□□□ -2.11
CARMIL3-202ENST00000559694 KRTAP5-7Q6L8G8 165 aa1.84□□□□□ -2.11
CARMIL3-202ENST00000559694 KRTAP5-11Q6L8G4 156 aa1.8□□□□□ -2.12
CARMIL3-202ENST00000559694 KRTAP21-2Q3LI59 83 aa1.78□□□□□ -2.12
CARMIL3-202ENST00000559694 PHGR1C9JFL3 82 aa1.68□□□□□ -2.14
CARMIL3-202ENST00000559694 KRTAP21-1Q3LI58 79 aa1.57□□□□□ -2.16
CARMIL3-202ENST00000559694 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 47.8 ms