RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 KRTAP2-3P0C7H8 128 aa3.79□□□□□ -1.8
LDLR-208ENST00000558518 KRTAP2-4Q9BYR9 128 aa3.79□□□□□ -1.8
LDLR-208ENST00000558518 KRTAP2-1Q9BYU5 128 aa3.79□□□□□ -1.8
LDLR-208ENST00000558518 MT1LQ93083 61 aa3.78□□□□□ -1.8
LDLR-208ENST00000558518 MT1EP04732 61 aa3.74□□□□□ -1.81
LDLR-208ENST00000558518 KRTAP12-4P60329 112 aa3.73□□□□□ -1.81
LDLR-208ENST00000558518 LCE2AQ5TA79 106 aaPredicted RBP3.71□□□□□ -1.82
LDLR-208ENST00000558518 SSPOA2VEC9 5147 aa3.69□□□□□ -1.82
LDLR-208ENST00000558518 SYNE2Q8WXH0 6885 aaKnown RBP3.65□□□□□ -1.82
LDLR-208ENST00000558518 LCE3BQ5TA77 95 aa3.65□□□□□ -1.83
LDLR-208ENST00000558518 KRTAP4-9Q9BYQ8 210 aa3.64□□□□□ -1.83
LDLR-208ENST00000558518 LCE2DQ5TA82 110 aaPredicted RBP3.51□□□□□ -1.85
LDLR-208ENST00000558518 MT1MQ8N339 61 aa3.51□□□□□ -1.85
LDLR-208ENST00000558518 SPRR2FQ96RM1 72 aa3.51□□□□□ -1.85
LDLR-208ENST00000558518 KRTAP9-2Q9BYQ4 174 aa3.48□□□□□ -1.85
LDLR-208ENST00000558518 KRTAP19-3Q7Z4W3 81 aa3.47□□□□□ -1.85
LDLR-208ENST00000558518 KRTAP19-4Q3LI73 84 aa3.47□□□□□ -1.85
LDLR-208ENST00000558518 MACF1Q9UPN3 7388 aaKnown RBP3.38□□□□□ -1.87
LDLR-208ENST00000558518 KRTAP9-7A8MTY7 169 aa3.37□□□□□ -1.87
LDLR-208ENST00000558518 KRTAP19-6Q3LI70 58 aa3.34□□□□□ -1.87
LDLR-208ENST00000558518 PRM1P04553 51 aa3.34□□□□□ -1.87
LDLR-208ENST00000558518 LCE3DQ9BYE3 92 aa3.33□□□□□ -1.88
LDLR-208ENST00000558518 MDN1Q9NU22 5596 aa3.32□□□□□ -1.88
LDLR-208ENST00000558518 KRTAP6-1Q3LI64 71 aa3.31□□□□□ -1.88
LDLR-208ENST00000558518 KRTAP9-6A0A140TA67 174 aa3.31□□□□□ -1.88
LDLR-208ENST00000558518 LCE3EQ5T5B0 92 aa3.27□□□□□ -1.89
LDLR-208ENST00000558518 LCE5AQ5TCM9 118 aa3.23□□□□□ -1.89
LDLR-208ENST00000558518 KRTAP5-5Q701N2 237 aaPredicted RBP3.13□□□□□ -1.91
LDLR-208ENST00000558518 MT1AP04731 61 aa3.11□□□□□ -1.91
LDLR-208ENST00000558518 KRTAP6-2Q3LI66 62 aa3.11□□□□□ -1.91
LDLR-208ENST00000558518 SPRR2EP22531 72 aa3.07□□□□□ -1.92
LDLR-208ENST00000558518 SPRR2BP35325 72 aa3.07□□□□□ -1.92
LDLR-208ENST00000558518 SPRR2AP35326 72 aa3.07□□□□□ -1.92
LDLR-208ENST00000558518 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.01□□□□□ -1.93
LDLR-208ENST00000558518 LCE1AQ5T7P2 110 aa2.98□□□□□ -1.93
LDLR-208ENST00000558518 KRTAP9-4Q9BYQ2 154 aa2.92□□□□□ -1.94
LDLR-208ENST00000558518 SPRR2DP22532 72 aa2.9□□□□□ -1.95
LDLR-208ENST00000558518 MT3P25713 68 aa2.86□□□□□ -1.95
LDLR-208ENST00000558518 KRTAP6-3Q3LI67 103 aa2.85□□□□□ -1.95
LDLR-208ENST00000558518 KRTAP2-2Q9BYT5 123 aa2.83□□□□□ -1.96
LDLR-208ENST00000558518 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
LDLR-208ENST00000558518 NEBP20929 6669 aa2.8□□□□□ -1.96
LDLR-208ENST00000558518 KRTAP5-9P26371 169 aa2.79□□□□□ -1.96
LDLR-208ENST00000558518 MT4P47944 62 aa2.76□□□□□ -1.97
LDLR-208ENST00000558518 KRTAP20-1Q3LI63 56 aa2.67□□□□□ -1.98
LDLR-208ENST00000558518 LCE1EQ5T753 118 aa2.67□□□□□ -1.98
LDLR-208ENST00000558518 LCE1DQ5T752 114 aa2.65□□□□□ -1.98
LDLR-208ENST00000558518 KRTAP4-6Q9BYQ5 205 aa2.64□□□□□ -1.99
LDLR-208ENST00000558518 LCE1BQ5T7P3 118 aa2.61□□□□□ -1.99
LDLR-208ENST00000558518 KRTAP4-11Q9BYQ6 195 aa2.59□□□□□ -2
LDLR-208ENST00000558518 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
LDLR-208ENST00000558518 GPR98Q8WXG9 6306 aa2.51□□□□□ -2.01
LDLR-208ENST00000558518 HMCN1Q96RW7 5635 aa2.43□□□□□ -2.02
LDLR-208ENST00000558518 KRTAP20-2Q3LI61 65 aa2.4□□□□□ -2.02
LDLR-208ENST00000558518 KRTAP5-4Q6L8H1 288 aa2.39□□□□□ -2.03
LDLR-208ENST00000558518 LCE1FQ5T754 118 aa2.35□□□□□ -2.03
LDLR-208ENST00000558518 KRTAP5-10Q6L8G5 202 aa2.26□□□□□ -2.05
LDLR-208ENST00000558518 KRTAP5-2Q701N4 177 aa2.26□□□□□ -2.05
LDLR-208ENST00000558518 KRTAP4-4Q9BYR3 166 aa2.25□□□□□ -2.05
LDLR-208ENST00000558518 LCE4AQ5TA78 99 aa2.21□□□□□ -2.06
LDLR-208ENST00000558518 KRTAP5-3Q6L8H2 238 aa2.16□□□□□ -2.06
LDLR-208ENST00000558518 AHNAK2Q8IVF2 5795 aa2.13□□□□□ -2.07
LDLR-208ENST00000558518 KRTAP5-1Q6L8H4 278 aa2.1□□□□□ -2.07
LDLR-208ENST00000558518 KRTAP4-2Q9BYR5 136 aa2.08□□□□□ -2.08
LDLR-208ENST00000558518 KRTAP4-12Q9BQ66 201 aa2.03□□□□□ -2.08
LDLR-208ENST00000558518 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
LDLR-208ENST00000558518 LCE1CQ5T751 118 aa2□□□□□ -2.09
LDLR-208ENST00000558518 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
LDLR-208ENST00000558518 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
LDLR-208ENST00000558518 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
LDLR-208ENST00000558518 KRTAP9-9Q9BYP9 154 aa1.85□□□□□ -2.11
LDLR-208ENST00000558518 AHNAKQ09666 5890 aaKnown RBP1.83□□□□□ -2.12
LDLR-208ENST00000558518 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.83□□□□□ -2.12
LDLR-208ENST00000558518 KRTAP5-7Q6L8G8 165 aa1.8□□□□□ -2.12
LDLR-208ENST00000558518 KRTAP5-11Q6L8G4 156 aa1.68□□□□□ -2.14
LDLR-208ENST00000558518 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
LDLR-208ENST00000558518 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 6.8 ms