RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 H1FX-AS1Q4G0G2 97 aa1.84□□□□□ -2.11
PRPF39-212ENST00000557477 COX6B2Q6YFQ2 88 aa1.84□□□□□ -2.11
PRPF39-212ENST00000557477 MUC19Q7Z5P9 8384 aa1.83□□□□□ -2.12
PRPF39-212ENST00000557477 PLAC4Q8WY50 150 aa1.83□□□□□ -2.12
PRPF39-212ENST00000557477 MUC2Q02817 5179 aa1.82□□□□□ -2.12
PRPF39-212ENST00000557477 M0R2T5 61 aa1.82□□□□□ -2.12
PRPF39-212ENST00000557477 FAT4Q6V0I7 4981 aa1.82□□□□□ -2.12
PRPF39-212ENST00000557477 HMCN1Q96RW7 5635 aa1.82□□□□□ -2.12
PRPF39-212ENST00000557477 RPL37P61927 97 aaKnown RBP1.8□□□□□ -2.12
PRPF39-212ENST00000557477 INE1O15225 51 aa1.79□□□□□ -2.12
PRPF39-212ENST00000557477 SPRR1BP22528 89 aa1.79□□□□□ -2.12
PRPF39-212ENST00000557477 PRLHP81277 87 aa1.79□□□□□ -2.12
PRPF39-212ENST00000557477 KRTAP13-4Q3LI77 160 aa1.79□□□□□ -2.12
PRPF39-212ENST00000557477 C10orf95Q9H7T3 257 aa1.79□□□□□ -2.12
PRPF39-212ENST00000557477 FSIP2Q5CZC0 6907 aa1.75□□□□□ -2.13
PRPF39-212ENST00000557477 C9orf92A6NGG3 77 aa1.74□□□□□ -2.13
PRPF39-212ENST00000557477 SPINK1P00995 79 aa1.74□□□□□ -2.13
PRPF39-212ENST00000557477 RPS29P62273 56 aaKnown RBP1.72□□□□□ -2.13
PRPF39-212ENST00000557477 MT1HP80294 61 aa1.72□□□□□ -2.13
PRPF39-212ENST00000557477 KRTAP4-1Q9BYQ7 146 aa1.72□□□□□ -2.13
PRPF39-212ENST00000557477 MUC17Q685J3 4493 aa1.7□□□□□ -2.14
PRPF39-212ENST00000557477 S4R3F8 94 aa1.68□□□□□ -2.14
PRPF39-212ENST00000557477 A0A0D9SG42 100 aa1.65□□□□□ -2.15
PRPF39-212ENST00000557477 KRTAP19-2Q3LHN2 52 aa1.63□□□□□ -2.15
PRPF39-212ENST00000557477 KRTAP21-2Q3LI59 83 aa1.62□□□□□ -2.15
PRPF39-212ENST00000557477 MT2AP02795 61 aa1.57□□□□□ -2.16
PRPF39-212ENST00000557477 USH2AO75445 5202 aa1.56□□□□□ -2.16
PRPF39-212ENST00000557477 MT1FP04733 61 aa1.56□□□□□ -2.16
PRPF39-212ENST00000557477 KRTAP20-1Q3LI63 56 aa1.56□□□□□ -2.16
PRPF39-212ENST00000557477 SSPOA2VEC9 5147 aa1.55□□□□□ -2.16
PRPF39-212ENST00000557477 FLGP20930 4061 aaPredicted RBP1.55□□□□□ -2.16
PRPF39-212ENST00000557477 FCGBPQ9Y6R7 5405 aaPredicted RBP1.54□□□□□ -2.16
PRPF39-212ENST00000557477 M0QZ58 72 aa1.54□□□□□ -2.16
PRPF39-212ENST00000557477 MACF1Q9UPN3 7388 aaKnown RBP1.53□□□□□ -2.16
PRPF39-212ENST00000557477 SYNE2Q8WXH0 6885 aaKnown RBP1.52□□□□□ -2.17
PRPF39-212ENST00000557477 KRTAP19-6Q3LI70 58 aa1.52□□□□□ -2.17
PRPF39-212ENST00000557477 KRTAP2-3P0C7H8 128 aa1.44□□□□□ -2.18
PRPF39-212ENST00000557477 SPRR2EP22531 72 aa1.44□□□□□ -2.18
PRPF39-212ENST00000557477 SPRR2BP35325 72 aa1.44□□□□□ -2.18
PRPF39-212ENST00000557477 SPRR2AP35326 72 aa1.44□□□□□ -2.18
PRPF39-212ENST00000557477 KRTAP2-4Q9BYR9 128 aa1.44□□□□□ -2.18
PRPF39-212ENST00000557477 NEBP20929 6669 aa1.43□□□□□ -2.18
PRPF39-212ENST00000557477 SPRR2FQ96RM1 72 aa1.43□□□□□ -2.18
PRPF39-212ENST00000557477 MUC12Q9UKN1 5478 aa1.41□□□□□ -2.18
PRPF39-212ENST00000557477 SPRR2DP22532 72 aa1.4□□□□□ -2.19
PRPF39-212ENST00000557477 TNP1P09430 55 aa1.38□□□□□ -2.19
PRPF39-212ENST00000557477 KRTAP8-1Q8IUC2 63 aa1.38□□□□□ -2.19
PRPF39-212ENST00000557477 KRTAP2-1Q9BYU5 128 aa1.38□□□□□ -2.19
PRPF39-212ENST00000557477 MT1BP07438 61 aa1.37□□□□□ -2.19
PRPF39-212ENST00000557477 SPRR2GQ9BYE4 73 aa1.36□□□□□ -2.19
PRPF39-212ENST00000557477 KRTAP19-8Q3LI54 63 aa1.35□□□□□ -2.19
PRPF39-212ENST00000557477 MDN1Q9NU22 5596 aa1.35□□□□□ -2.19
PRPF39-212ENST00000557477 KMT2DO14686 5537 aa1.35□□□□□ -2.19
PRPF39-212ENST00000557477 GPR98Q8WXG9 6306 aa1.27□□□□□ -2.21
PRPF39-212ENST00000557477 MT1XP80297 61 aa1.26□□□□□ -2.21
PRPF39-212ENST00000557477 MT4P47944 62 aa1.24□□□□□ -2.21
PRPF39-212ENST00000557477 DSTQ03001 7570 aaKnown RBP1.18□□□□□ -2.22
PRPF39-212ENST00000557477 KRTAP19-3Q7Z4W3 81 aa1.17□□□□□ -2.22
PRPF39-212ENST00000557477 KRTAP5-10Q6L8G5 202 aa1.15□□□□□ -2.23
PRPF39-212ENST00000557477 MT1EP04732 61 aa1.14□□□□□ -2.23
PRPF39-212ENST00000557477 AHNAK2Q8IVF2 5795 aa1.12□□□□□ -2.23
PRPF39-212ENST00000557477 MT1GP13640 62 aa1.12□□□□□ -2.23
PRPF39-212ENST00000557477 KRTAP19-7Q3SYF9 63 aa1.11□□□□□ -2.23
PRPF39-212ENST00000557477 KRTAP19-5Q3LI72 72 aa1.1□□□□□ -2.23
PRPF39-212ENST00000557477 MT1MQ8N339 61 aa1.1□□□□□ -2.23
PRPF39-212ENST00000557477 KRTAP20-2Q3LI61 65 aa1.06□□□□□ -2.24
PRPF39-212ENST00000557477 MT1LQ93083 61 aa1.06□□□□□ -2.24
PRPF39-212ENST00000557477 PRM1P04553 51 aa1.04□□□□□ -2.24
PRPF39-212ENST00000557477 MUC5ACP98088 5654 aa0.98□□□□□ -2.25
PRPF39-212ENST00000557477 AHNAKQ09666 5890 aaKnown RBP0.97□□□□□ -2.25
PRPF39-212ENST00000557477 SYNE1Q8NF91 8797 aaKnown RBP0.95□□□□□ -2.26
PRPF39-212ENST00000557477 MT1AP04731 61 aa0.94□□□□□ -2.26
PRPF39-212ENST00000557477 MUC5BQ9HC84 5762 aaPredicted RBP0.93□□□□□ -2.26
PRPF39-212ENST00000557477 KRTAP6-1Q3LI64 71 aa0.91□□□□□ -2.26
PRPF39-212ENST00000557477 KRTAP6-2Q3LI66 62 aa0.91□□□□□ -2.26
PRPF39-212ENST00000557477 MUC16Q8WXI7 14507 aa0.87□□□□□ -2.27
PRPF39-212ENST00000557477 PHGR1C9JFL3 82 aa0.74□□□□□ -2.29
PRPF39-212ENST00000557477 KRTAP21-1Q3LI58 79 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 118.2 ms