RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 AEBP2Q6ZN18 517 aaPredicted RBP21.35■■□□□ 1.01
PRPF39-212ENST00000557477 CHIC1Q5VXU3 224 aa20.78■□□□□ 0.92
PRPF39-212ENST00000557477 PHF23Q9BUL5 403 aaPredicted RBP18.3■□□□□ 0.52
PRPF39-212ENST00000557477 SENP3Q9H4L4 574 aaPredicted RBP18■□□□□ 0.47
PRPF39-212ENST00000557477 PLPPR3Q6T4P5 718 aa16.97■□□□□ 0.31
PRPF39-212ENST00000557477 FOXD1Q16676 465 aa16.86■□□□□ 0.29
PRPF39-212ENST00000557477 POTEDQ86YR6 584 aa16.64■□□□□ 0.25
PRPF39-212ENST00000557477 ADRA2BP18089 450 aa16.11■□□□□ 0.17
PRPF39-212ENST00000557477 PPP6R1Q9UPN7 881 aa16.09■□□□□ 0.17
PRPF39-212ENST00000557477 PIAS4Q8N2W9 510 aaPredicted RBP15.82■□□□□ 0.12
PRPF39-212ENST00000557477 MSH5O43196 834 aa15.55■□□□□ 0.08
PRPF39-212ENST00000557477 KCNA4P22459 653 aa15.17■□□□□ 0.02
PRPF39-212ENST00000557477 PPP4R3CPQ6ZMV5 832 aa15.03■□□□□ -0
PRPF39-212ENST00000557477 SCAF1Q9H7N4 1312 aaKnown RBP14.73□□□□□ -0.05
PRPF39-212ENST00000557477 NCBP3Q53F19 620 aaKnown RBP14.69□□□□□ -0.06
PRPF39-212ENST00000557477 MAPK8IP2Q13387 824 aaPredicted RBP14.68□□□□□ -0.06
PRPF39-212ENST00000557477 EHMT2Q96KQ7 1210 aa14.58□□□□□ -0.08
PRPF39-212ENST00000557477 NPM3O75607 178 aaKnown RBP14.55□□□□□ -0.08
PRPF39-212ENST00000557477 CNKSR2Q8WXI2 1034 aa14.52□□□□□ -0.09
PRPF39-212ENST00000557477 SLC4A1APQ9BWU0 796 aaKnown RBP14.48□□□□□ -0.09
PRPF39-212ENST00000557477 DMRT2Q9Y5R5 561 aa14.36□□□□□ -0.11
PRPF39-212ENST00000557477 CSRNP3Q8WYN3 585 aa14.2□□□□□ -0.14
PRPF39-212ENST00000557477 RNF216Q9NWF9 866 aaPredicted RBP14.17□□□□□ -0.14
PRPF39-212ENST00000557477 HOXD11P31277 338 aaPredicted RBP14.05□□□□□ -0.16
PRPF39-212ENST00000557477 ZBTB22O15209 634 aa14.01□□□□□ -0.17
PRPF39-212ENST00000557477 DNAJC5BQ9UF47 199 aa14.01□□□□□ -0.17
PRPF39-212ENST00000557477 DCAF8L1A6NGE4 600 aa13.88□□□□□ -0.19
PRPF39-212ENST00000557477 FOXD4L1Q9NU39 408 aa13.8□□□□□ -0.2
PRPF39-212ENST00000557477 CACNB1Q02641 598 aaPredicted RBP13.72□□□□□ -0.21
PRPF39-212ENST00000557477 SLC4A2P04920 1241 aa13.66□□□□□ -0.22
PRPF39-212ENST00000557477 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.46□□□□□ -0.252e-6■□□□□ 10.5
PRPF39-212ENST00000557477 MYCNP04198 464 aaPredicted RBP13.4□□□□□ -0.26
PRPF39-212ENST00000557477 RNF39Q9H2S5 420 aa13.32□□□□□ -0.28
PRPF39-212ENST00000557477 ATXN8OSP0DMR3 200 aa13.24□□□□□ -0.29
PRPF39-212ENST00000557477 U3KPZ7 1027 aaPredicted RBP13.22□□□□□ -0.29
PRPF39-212ENST00000557477 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.13□□□□□ -0.31
PRPF39-212ENST00000557477 HNRNPUL2Q1KMD3 747 aaKnown RBP13.13□□□□□ -0.31
PRPF39-212ENST00000557477 SAMD1Q6SPF0 538 aaPredicted RBP13.1□□□□□ -0.31
PRPF39-212ENST00000557477 ATF5Q9Y2D1 282 aaPredicted RBP13.09□□□□□ -0.31
PRPF39-212ENST00000557477 C1QBPQ07021 282 aaKnown RBP13.07□□□□□ -0.32
PRPF39-212ENST00000557477 APLP2Q06481 763 aa12.95□□□□□ -0.34
PRPF39-212ENST00000557477 SPINK5Q9NQ38 1064 aaPredicted RBP12.9□□□□□ -0.34
PRPF39-212ENST00000557477 POTEHQ6S545 545 aa12.84□□□□□ -0.35
PRPF39-212ENST00000557477 CAPN15O75808 1086 aa12.81□□□□□ -0.36
PRPF39-212ENST00000557477 FKBP8Q14318 412 aa12.81□□□□□ -0.36
PRPF39-212ENST00000557477 ZNF219Q9P2Y4 722 aaPredicted RBP12.78□□□□□ -0.36
PRPF39-212ENST00000557477 TRHP20396 242 aaPredicted RBP12.77□□□□□ -0.37
PRPF39-212ENST00000557477 ABCB7O75027 752 aa12.62□□□□□ -0.39
PRPF39-212ENST00000557477 DSG3P32926 999 aa12.62□□□□□ -0.39
PRPF39-212ENST00000557477 POLA2Q14181 598 aa12.59□□□□□ -0.39
PRPF39-212ENST00000557477 MKRN4PQ13434 485 aaPredicted RBP12.53□□□□□ -0.4
PRPF39-212ENST00000557477 FBLN2P98095 1184 aa12.43□□□□□ -0.42
PRPF39-212ENST00000557477 SPDYE4A6NLX3 237 aa12.39□□□□□ -0.43
PRPF39-212ENST00000557477 RTN4Q9NQC3 1192 aaKnown RBP12.39□□□□□ -0.43
PRPF39-212ENST00000557477 ZBTB12Q9Y330 459 aaPredicted RBP12.37□□□□□ -0.43
PRPF39-212ENST00000557477 AMER1Q5JTC6 1135 aaPredicted RBP12.33□□□□□ -0.44
PRPF39-212ENST00000557477 PROM2Q8N271 834 aa12.26□□□□□ -0.45
PRPF39-212ENST00000557477 FBXO3Q9UK99 471 aa12.17□□□□□ -0.46
PRPF39-212ENST00000557477 OSCARQ8IYS5 282 aa12.15□□□□□ -0.46
PRPF39-212ENST00000557477 ZNF692Q9BU19 519 aaPredicted RBP12.07□□□□□ -0.48
PRPF39-212ENST00000557477 VASPP50552 380 aaPredicted RBP12.06□□□□□ -0.48
PRPF39-212ENST00000557477 SPDYE2BA6NHP3 402 aa12.05□□□□□ -0.48
PRPF39-212ENST00000557477 SPDYE6P0CI01 402 aa12.05□□□□□ -0.48
PRPF39-212ENST00000557477 SPDYE2Q495Y8 402 aa12.05□□□□□ -0.48
PRPF39-212ENST00000557477 SSUH2Q9Y2M2 353 aa11.99□□□□□ -0.49
PRPF39-212ENST00000557477 IFNLR1Q8IU57 520 aaPredicted RBP11.94□□□□□ -0.5
PRPF39-212ENST00000557477 PABPN1Q86U42 306 aaKnown RBP eCLIP11.91□□□□□ -0.5
PRPF39-212ENST00000557477 RBM42Q9BTD8 480 aaKnown RBP11.91□□□□□ -0.5
PRPF39-212ENST00000557477 SLC24A1O60721 1099 aa11.8□□□□□ -0.52
PRPF39-212ENST00000557477 STAG3Q9UJ98 1225 aa11.8□□□□□ -0.52
PRPF39-212ENST00000557477 AKT1S1Q96B36 256 aa11.78□□□□□ -0.52
PRPF39-212ENST00000557477 KLHL34Q8N239 644 aa11.73□□□□□ -0.53
PRPF39-212ENST00000557477 PLCD3Q8N3E9 789 aa11.73□□□□□ -0.53
PRPF39-212ENST00000557477 REM2Q8IYK8 340 aaPredicted RBP11.72□□□□□ -0.53
PRPF39-212ENST00000557477 PKD2Q13563 968 aa11.7□□□□□ -0.54
PRPF39-212ENST00000557477 MIER1Q8N108 512 aa11.69□□□□□ -0.54
PRPF39-212ENST00000557477 SPOCK2Q92563 424 aa11.69□□□□□ -0.54
PRPF39-212ENST00000557477 SPDYE1Q8NFV5 336 aaPredicted RBP11.66□□□□□ -0.54
PRPF39-212ENST00000557477 CLEC11AQ9Y240 323 aa11.64□□□□□ -0.55
PRPF39-212ENST00000557477 PITPNM1O00562 1244 aa11.62□□□□□ -0.55
PRPF39-212ENST00000557477 CHRDL2Q6WN34 429 aa11.62□□□□□ -0.55
PRPF39-212ENST00000557477 DCAF8L2P0C7V8 631 aa11.57□□□□□ -0.56
PRPF39-212ENST00000557477 SP7Q8TDD2 431 aaPredicted RBP11.57□□□□□ -0.56
PRPF39-212ENST00000557477 PLEKHG5O94827 1062 aa11.55□□□□□ -0.56
PRPF39-212ENST00000557477 PRR29P0C7W0 189 aa11.55□□□□□ -0.56
PRPF39-212ENST00000557477 ECM2O94769 699 aaPredicted RBP11.52□□□□□ -0.57
PRPF39-212ENST00000557477 ZBTB47Q9UFB7 747 aaPredicted RBP11.51□□□□□ -0.57
PRPF39-212ENST00000557477 PIP4P2Q8N4L2 257 aa11.45□□□□□ -0.58
PRPF39-212ENST00000557477 CIZ1Q9ULV3 898 aaPredicted RBP11.45□□□□□ -0.58
PRPF39-212ENST00000557477 RGL2O15211 777 aa11.44□□□□□ -0.58
PRPF39-212ENST00000557477 PLCB2Q00722 1185 aa11.43□□□□□ -0.58
PRPF39-212ENST00000557477 CREBZFQ9NS37 354 aa11.43□□□□□ -0.58
PRPF39-212ENST00000557477 FXR2P51116 673 aaKnown RBP eCLIP11.39□□□□□ -0.59
PRPF39-212ENST00000557477 NUBP1P53384 320 aa11.39□□□□□ -0.59
PRPF39-212ENST00000557477 MNX1P50219 401 aaPredicted RBP11.37□□□□□ -0.59
PRPF39-212ENST00000557477 NPM1P06748 294 aaKnown RBP eCLIP11.36□□□□□ -0.59
PRPF39-212ENST00000557477 CHADLQ6NUI6 762 aa11.34□□□□□ -0.59
PRPF39-212ENST00000557477 PRKAR2AP13861 404 aaKnown RBP11.32□□□□□ -0.6
PRPF39-212ENST00000557477 GSE1Q14687 1217 aa11.31□□□□□ -0.6
PRPF39-212ENST00000557477 TRIM41Q8WV44 630 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 165.9 ms