RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 PKHD1P08F94 4074 aa1.09□□□□□ -2.23
PRPF39-210ENST00000556718 KRTAP2-3P0C7H8 128 aa1.09□□□□□ -2.23
PRPF39-210ENST00000556718 KRTAP2-4Q9BYR9 128 aa1.09□□□□□ -2.23
PRPF39-210ENST00000556718 KRTAP2-1Q9BYU5 128 aa1.09□□□□□ -2.23
PRPF39-210ENST00000556718 FAT3Q8TDW7 4589 aa1.08□□□□□ -2.24
PRPF39-210ENST00000556718 MT1HL1P0DM35 61 aa1.08□□□□□ -2.24
PRPF39-210ENST00000556718 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
PRPF39-210ENST00000556718 PKHD1L1Q86WI1 4243 aa1.08□□□□□ -2.24
PRPF39-210ENST00000556718 TNXBP22105 4242 aa1.07□□□□□ -2.24
PRPF39-210ENST00000556718 HSPG2P98160 4391 aa1.06□□□□□ -2.24
PRPF39-210ENST00000556718 FAT1Q14517 4588 aa1.06□□□□□ -2.24
PRPF39-210ENST00000556718 FAT2Q9NYQ8 4349 aa1.06□□□□□ -2.24
PRPF39-210ENST00000556718 HERC1Q15751 4861 aa1.02□□□□□ -2.25
PRPF39-210ENST00000556718 KRTAP19-8Q3LI54 63 aa1.02□□□□□ -2.25
PRPF39-210ENST00000556718 KRTAP19-2Q3LHN2 52 aa1.01□□□□□ -2.25
PRPF39-210ENST00000556718 UBR4Q5T4S7 5183 aa1□□□□□ -2.25
PRPF39-210ENST00000556718 LPAP08519 4548 aa1□□□□□ -2.25
PRPF39-210ENST00000556718 KRTAP19-5Q3LI72 72 aa0.99□□□□□ -2.25
PRPF39-210ENST00000556718 DNHD1Q96M86 4753 aa0.99□□□□□ -2.25
PRPF39-210ENST00000556718 MT1XP80297 61 aa0.98□□□□□ -2.25
PRPF39-210ENST00000556718 GPR98Q8WXG9 6306 aa0.98□□□□□ -2.25
PRPF39-210ENST00000556718 MT1AP04731 61 aa0.94□□□□□ -2.26
PRPF39-210ENST00000556718 MT1EP04732 61 aa0.94□□□□□ -2.26
PRPF39-210ENST00000556718 PCLOQ9Y6V0 5065 aa0.94□□□□□ -2.26
PRPF39-210ENST00000556718 MUC17Q685J3 4493 aa0.93□□□□□ -2.26
PRPF39-210ENST00000556718 MT2AP02795 61 aa0.93□□□□□ -2.26
PRPF39-210ENST00000556718 MT1BP07438 61 aa0.93□□□□□ -2.26
PRPF39-210ENST00000556718 LRP2P98164 4655 aa0.93□□□□□ -2.26
PRPF39-210ENST00000556718 MT1LQ93083 61 aa0.93□□□□□ -2.26
PRPF39-210ENST00000556718 HYDINQ4G0P3 5121 aa0.92□□□□□ -2.26
PRPF39-210ENST00000556718 RYR3Q15413 4870 aa0.91□□□□□ -2.26
PRPF39-210ENST00000556718 MT1FP04733 61 aa0.91□□□□□ -2.26
PRPF39-210ENST00000556718 AHNAK2Q8IVF2 5795 aa0.91□□□□□ -2.26
PRPF39-210ENST00000556718 RYR2Q92736 4967 aa0.91□□□□□ -2.26
PRPF39-210ENST00000556718 RYR1P21817 5038 aa0.9□□□□□ -2.26
PRPF39-210ENST00000556718 PRM1P04553 51 aa0.9□□□□□ -2.27
PRPF39-210ENST00000556718 KMT2CQ8NEZ4 4911 aaKnown RBP0.9□□□□□ -2.27
PRPF39-210ENST00000556718 MT1HP80294 61 aa0.88□□□□□ -2.27
PRPF39-210ENST00000556718 MUC2Q02817 5179 aa0.87□□□□□ -2.27
PRPF39-210ENST00000556718 KIAA1109Q2LD37 5005 aa0.86□□□□□ -2.27
PRPF39-210ENST00000556718 KRTAP19-7Q3SYF9 63 aa0.86□□□□□ -2.27
PRPF39-210ENST00000556718 KRTAP19-3Q7Z4W3 81 aa0.86□□□□□ -2.27
PRPF39-210ENST00000556718 HERC2O95714 4834 aa0.85□□□□□ -2.27
PRPF39-210ENST00000556718 MT1GP13640 62 aa0.84□□□□□ -2.27
PRPF39-210ENST00000556718 SPRR2AP35326 72 aa0.83□□□□□ -2.28
PRPF39-210ENST00000556718 SPRR2FQ96RM1 72 aa0.83□□□□□ -2.28
PRPF39-210ENST00000556718 HMCN2Q8NDA2 5059 aa0.82□□□□□ -2.28
PRPF39-210ENST00000556718 BIRC6Q9NR09 4857 aa0.82□□□□□ -2.28
PRPF39-210ENST00000556718 SPRR2BP35325 72 aa0.8□□□□□ -2.28
PRPF39-210ENST00000556718 KRTAP6-2Q3LI66 62 aa0.8□□□□□ -2.28
PRPF39-210ENST00000556718 MT1MQ8N339 61 aa0.8□□□□□ -2.28
PRPF39-210ENST00000556718 MACF1Q9UPN3 7388 aaKnown RBP0.79□□□□□ -2.28
PRPF39-210ENST00000556718 ABCA13Q86UQ4 5058 aa0.79□□□□□ -2.28
PRPF39-210ENST00000556718 AHNAKQ09666 5890 aaKnown RBP0.79□□□□□ -2.28
PRPF39-210ENST00000556718 SPRR2DP22532 72 aa0.78□□□□□ -2.28
PRPF39-210ENST00000556718 SPRR2EP22531 72 aa0.77□□□□□ -2.29
PRPF39-210ENST00000556718 EPPK1P58107 5090 aaKnown RBP0.75□□□□□ -2.29
PRPF39-210ENST00000556718 SYNE2Q8WXH0 6885 aaKnown RBP0.75□□□□□ -2.29
PRPF39-210ENST00000556718 MUC5BQ9HC84 5762 aaPredicted RBP0.74□□□□□ -2.29
PRPF39-210ENST00000556718 NEBP20929 6669 aa0.72□□□□□ -2.29
PRPF39-210ENST00000556718 KRTAP6-1Q3LI64 71 aa0.72□□□□□ -2.29
PRPF39-210ENST00000556718 FSIP2Q5CZC0 6907 aa0.69□□□□□ -2.3
PRPF39-210ENST00000556718 RNF213Q63HN8 5207 aa0.68□□□□□ -2.3
PRPF39-210ENST00000556718 FAT4Q6V0I7 4981 aa0.68□□□□□ -2.3
PRPF39-210ENST00000556718 MDN1Q9NU22 5596 aa0.67□□□□□ -2.3
PRPF39-210ENST00000556718 USH2AO75445 5202 aa0.67□□□□□ -2.3
PRPF39-210ENST00000556718 KRTAP19-6Q3LI70 58 aa0.67□□□□□ -2.3
PRPF39-210ENST00000556718 DSTQ03001 7570 aaKnown RBP0.65□□□□□ -2.3
PRPF39-210ENST00000556718 SSPOA2VEC9 5147 aa0.64□□□□□ -2.31
PRPF39-210ENST00000556718 SYNE1Q8NF91 8797 aaKnown RBP0.63□□□□□ -2.31
PRPF39-210ENST00000556718 KMT2DO14686 5537 aa0.63□□□□□ -2.31
PRPF39-210ENST00000556718 MUC5ACP98088 5654 aa0.61□□□□□ -2.31
PRPF39-210ENST00000556718 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
PRPF39-210ENST00000556718 KRTAP20-1Q3LI63 56 aa0.51□□□□□ -2.33
PRPF39-210ENST00000556718 MUC12Q9UKN1 5478 aa0.51□□□□□ -2.33
PRPF39-210ENST00000556718 KRTAP20-2Q3LI61 65 aa0.45□□□□□ -2.34
PRPF39-210ENST00000556718 PHGR1C9JFL3 82 aa0.44□□□□□ -2.34
PRPF39-210ENST00000556718 MT4P47944 62 aa0.42□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 38.5 ms