RNA–Protein interactions for RNA: ENST00000554290.1

CPSF2-203, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 4

Gene CPSF2, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-203ENST00000554290 C10orf95Q9H7T3 257 aa6.56□□□□□ -1.36
CPSF2-203ENST00000554290 LCE3AQ5TA76 89 aa6.55□□□□□ -1.36
CPSF2-203ENST00000554290 HMCN1Q96RW7 5635 aa6.53□□□□□ -1.36
CPSF2-203ENST00000554290 KRTAP4-3Q9BYR4 195 aa6.51□□□□□ -1.37
CPSF2-203ENST00000554290 KRTAP5-4Q6L8H1 288 aa6.49□□□□□ -1.37
CPSF2-203ENST00000554290 KRTAP9-9Q9BYP9 154 aa6.42□□□□□ -1.38
CPSF2-203ENST00000554290 KRTAP9-4Q9BYQ2 154 aa6.42□□□□□ -1.38
CPSF2-203ENST00000554290 PRR15LQ9BU68 103 aa6.37□□□□□ -1.39
CPSF2-203ENST00000554290 KRTAP5-10Q6L8G5 202 aa6.34□□□□□ -1.39
CPSF2-203ENST00000554290 AHNAK2Q8IVF2 5795 aa6.33□□□□□ -1.4
CPSF2-203ENST00000554290 KRTAP12-3P60328 96 aa6.32□□□□□ -1.4
CPSF2-203ENST00000554290 ANAPC13Q9BS18 74 aa6.31□□□□□ -1.4
CPSF2-203ENST00000554290 KRTAP4-7Q9BYR0 210 aa6.3□□□□□ -1.4
CPSF2-203ENST00000554290 ATP5EP56381 51 aaPredicted RBP6.22□□□□□ -1.41
CPSF2-203ENST00000554290 LINC01558Q9Y6Z2 57 aa6.21□□□□□ -1.42
CPSF2-203ENST00000554290 KRTAP23-1A1A580 65 aa6.2□□□□□ -1.42
CPSF2-203ENST00000554290 CCDC179H3BU77 68 aa6.16□□□□□ -1.42
CPSF2-203ENST00000554290 KRTAP5-3Q6L8H2 238 aa6.16□□□□□ -1.42
CPSF2-203ENST00000554290 UQCR11O14957 56 aa6.15□□□□□ -1.42
CPSF2-203ENST00000554290 KRTAP20-2Q3LI61 65 aa6.14□□□□□ -1.43
CPSF2-203ENST00000554290 KRTAP5-7Q6L8G8 165 aa6.13□□□□□ -1.43
CPSF2-203ENST00000554290 KRTAP5-5Q701N2 237 aaPredicted RBP6.13□□□□□ -1.43
CPSF2-203ENST00000554290 SPRR5A0A1B0GTR4 108 aa6.12□□□□□ -1.43
CPSF2-203ENST00000554290 KRTAP12-4P60329 112 aa6.09□□□□□ -1.43
CPSF2-203ENST00000554290 KRTAP25-1Q3LHN0 102 aa6.08□□□□□ -1.44
CPSF2-203ENST00000554290 MIR22HGQ0VDD5 57 aa5.97□□□□□ -1.45
CPSF2-203ENST00000554290 K7ERS5 55 aa5.95□□□□□ -1.46
CPSF2-203ENST00000554290 TMEM258P61165 79 aa5.95□□□□□ -1.46
CPSF2-203ENST00000554290 KRTAP15-1Q3LI76 137 aa5.84□□□□□ -1.47
CPSF2-203ENST00000554290 LCE3CQ5T5A8 94 aa5.8□□□□□ -1.48
CPSF2-203ENST00000554290 KRTAP4-11Q9BYQ6 195 aa5.78□□□□□ -1.48
CPSF2-203ENST00000554290 KRTAP4-2Q9BYR5 136 aa5.73□□□□□ -1.49
CPSF2-203ENST00000554290 SYNE1Q8NF91 8797 aaKnown RBP5.73□□□□□ -1.49
CPSF2-203ENST00000554290 SVIPQ8NHG7 77 aa5.72□□□□□ -1.49
CPSF2-203ENST00000554290 V9GYY9 64 aa5.72□□□□□ -1.49
CPSF2-203ENST00000554290 PSPHP1O15172 72 aa5.71□□□□□ -1.5
CPSF2-203ENST00000554290 MT1AP04731 61 aa5.67□□□□□ -1.5
CPSF2-203ENST00000554290 Q1T7F1 81 aa5.63□□□□□ -1.51
CPSF2-203ENST00000554290 KRTAP6-1Q3LI64 71 aa5.63□□□□□ -1.51
CPSF2-203ENST00000554290 KRTAP5-2Q701N4 177 aa5.63□□□□□ -1.51
CPSF2-203ENST00000554290 CDC42SE1Q9NRR8 79 aa5.57□□□□□ -1.52
CPSF2-203ENST00000554290 A6NED7 52 aa5.52□□□□□ -1.53
CPSF2-203ENST00000554290 RPS28P62857 69 aaKnown RBP5.51□□□□□ -1.53
CPSF2-203ENST00000554290 KRTAP5-8O75690 187 aa5.47□□□□□ -1.53
CPSF2-203ENST00000554290 ROMO1P60602 79 aa5.46□□□□□ -1.54
CPSF2-203ENST00000554290 KRTAP9-6A8MVA2 160 aa5.43□□□□□ -1.54
CPSF2-203ENST00000554290 KRTAP6-2Q3LI66 62 aa5.43□□□□□ -1.54
CPSF2-203ENST00000554290 MUC5ACP98088 5654 aa5.3□□□□□ -1.56
CPSF2-203ENST00000554290 AHNAKQ09666 5890 aaKnown RBP5.26□□□□□ -1.57
CPSF2-203ENST00000554290 OBSCNQ5VST9 7968 aa5.26□□□□□ -1.57
CPSF2-203ENST00000554290 MUC5BQ9HC84 5762 aaPredicted RBP5.24□□□□□ -1.57
CPSF2-203ENST00000554290 MT3P25713 68 aa5.22□□□□□ -1.57
CPSF2-203ENST00000554290 PCP4P48539 62 aa5.22□□□□□ -1.57
CPSF2-203ENST00000554290 A0A0A0MQY5 61 aa5.12□□□□□ -1.59
CPSF2-203ENST00000554290 KRTAP5-1Q6L8H4 278 aa5.1□□□□□ -1.59
CPSF2-203ENST00000554290 LCE1EQ5T753 118 aa4.84□□□□□ -1.63
CPSF2-203ENST00000554290 LCE1BQ5T7P3 118 aa4.57□□□□□ -1.68
CPSF2-203ENST00000554290 LCE1CQ5T751 118 aa4.48□□□□□ -1.69
CPSF2-203ENST00000554290 BRK1Q8WUW1 75 aa4.43□□□□□ -1.7
CPSF2-203ENST00000554290 PRAC1Q96KF2 57 aa4.19□□□□□ -1.74
CPSF2-203ENST00000554290 PMAIP1Q13794 54 aa4.16□□□□□ -1.74
CPSF2-203ENST00000554290 LCE3DQ9BYE3 92 aa4.16□□□□□ -1.74
CPSF2-203ENST00000554290 LCE1FQ5T754 118 aa4.09□□□□□ -1.75
CPSF2-203ENST00000554290 KRTAP5-11Q6L8G4 156 aa4.07□□□□□ -1.76
CPSF2-203ENST00000554290 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.04□□□□□ -1.76
CPSF2-203ENST00000554290 NDUFAF8A1L188 74 aa4□□□□□ -1.77
CPSF2-203ENST00000554290 LCE3EQ5T5B0 92 aa3.87□□□□□ -1.79
CPSF2-203ENST00000554290 PHGR1C9JFL3 82 aa3.72□□□□□ -1.81
CPSF2-203ENST00000554290 KRTAP21-2Q3LI59 83 aa3.71□□□□□ -1.82
CPSF2-203ENST00000554290 LUZP6Q538Z0 58 aa3.55□□□□□ -1.84
CPSF2-203ENST00000554290 PRO0628Q9UI54 55 aa3.55□□□□□ -1.84
CPSF2-203ENST00000554290 KTN1-AS1Q86SY8 53 aa3.48□□□□□ -1.85
CPSF2-203ENST00000554290 KRTAP4-4Q9BYR3 166 aa3.43□□□□□ -1.86
CPSF2-203ENST00000554290 MUC19Q7Z5P9 8384 aa3.23□□□□□ -1.89
CPSF2-203ENST00000554290 KRTAP21-1Q3LI58 79 aa2.84□□□□□ -1.95
CPSF2-203ENST00000554290 PRM1P04553 51 aa2.75□□□□□ -1.97
CPSF2-203ENST00000554290 MUC16Q8WXI7 14507 aa2.23□□□□□ -2.05
CPSF2-203ENST00000554290 INE1O15225 51 aa2.04□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 103.2 ms