RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 MT1FP04733 61 aa3.31□□□□□ -1.88
SIX4-202ENST00000554079 CRCT1Q9UGL9 99 aa3.31□□□□□ -1.88
SIX4-202ENST00000554079 KRTAP9-9Q9BYP9 154 aa3.29□□□□□ -1.88
SIX4-202ENST00000554079 KRTAP9-4Q9BYQ2 154 aa3.29□□□□□ -1.88
SIX4-202ENST00000554079 KRTAP9-3Q9BYQ3 159 aa3.25□□□□□ -1.89
SIX4-202ENST00000554079 USH2AO75445 5202 aa3.21□□□□□ -1.9
SIX4-202ENST00000554079 KRTAP12-4P60329 112 aa3.19□□□□□ -1.9
SIX4-202ENST00000554079 KRTAP4-7Q9BYR0 210 aa3.18□□□□□ -1.9
SIX4-202ENST00000554079 SSPOA2VEC9 5147 aa3.17□□□□□ -1.9
SIX4-202ENST00000554079 KRTAP4-8A0A0G2JLE6 195 aa3.17□□□□□ -1.9
SIX4-202ENST00000554079 LCE1DQ5T752 114 aa3.15□□□□□ -1.9
SIX4-202ENST00000554079 LCE5AQ5TCM9 118 aa3.12□□□□□ -1.91
SIX4-202ENST00000554079 KRTAP19-6Q3LI70 58 aa3.1□□□□□ -1.91
SIX4-202ENST00000554079 FCGBPQ9Y6R7 5405 aaPredicted RBP3.09□□□□□ -1.92
SIX4-202ENST00000554079 KRTAP19-7Q3SYF9 63 aa3.07□□□□□ -1.92
SIX4-202ENST00000554079 KRTAP2-2Q9BYT5 123 aa3.07□□□□□ -1.92
SIX4-202ENST00000554079 KRTAP6-3Q3LI67 103 aa3.04□□□□□ -1.92
SIX4-202ENST00000554079 KRTAP4-9Q9BYQ8 210 aa3.03□□□□□ -1.92
SIX4-202ENST00000554079 MACF1Q9UPN3 7388 aaKnown RBP3.02□□□□□ -1.93
SIX4-202ENST00000554079 MT1LQ93083 61 aa3.02□□□□□ -1.93
SIX4-202ENST00000554079 KMT2DO14686 5537 aa2.99□□□□□ -1.93
SIX4-202ENST00000554079 KRTAP5-3Q6L8H2 238 aa2.97□□□□□ -1.93
SIX4-202ENST00000554079 KRTAP4-11Q9BYQ6 195 aa2.97□□□□□ -1.93
SIX4-202ENST00000554079 LCE1AQ5T7P2 110 aa2.97□□□□□ -1.93
SIX4-202ENST00000554079 SYNE2Q8WXH0 6885 aaKnown RBP2.96□□□□□ -1.94
SIX4-202ENST00000554079 MT1EP04732 61 aa2.93□□□□□ -1.94
SIX4-202ENST00000554079 PRM1P04553 51 aa2.92□□□□□ -1.94
SIX4-202ENST00000554079 KRTAP4-2Q9BYR5 136 aa2.91□□□□□ -1.94
SIX4-202ENST00000554079 KRTAP5-5Q701N2 237 aaPredicted RBP2.9□□□□□ -1.95
SIX4-202ENST00000554079 MT1GP13640 62 aa2.84□□□□□ -1.95
SIX4-202ENST00000554079 KRTAP4-3Q9BYR4 195 aa2.83□□□□□ -1.96
SIX4-202ENST00000554079 MT1AP04731 61 aa2.81□□□□□ -1.96
SIX4-202ENST00000554079 SYNE1Q8NF91 8797 aaKnown RBP2.8□□□□□ -1.96
SIX4-202ENST00000554079 MUC12Q9UKN1 5478 aa2.8□□□□□ -1.96
SIX4-202ENST00000554079 KRTAP5-9P26371 169 aa2.8□□□□□ -1.96
SIX4-202ENST00000554079 LCE3EQ5T5B0 92 aa2.77□□□□□ -1.97
SIX4-202ENST00000554079 LCE1EQ5T753 118 aa2.76□□□□□ -1.97
SIX4-202ENST00000554079 SPRR2FQ96RM1 72 aa2.75□□□□□ -1.97
SIX4-202ENST00000554079 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
SIX4-202ENST00000554079 NEBP20929 6669 aa2.74□□□□□ -1.97
SIX4-202ENST00000554079 MDN1Q9NU22 5596 aa2.72□□□□□ -1.97
SIX4-202ENST00000554079 MT1MQ8N339 61 aa2.7□□□□□ -1.98
SIX4-202ENST00000554079 SPRR2EP22531 72 aa2.69□□□□□ -1.98
SIX4-202ENST00000554079 SPRR2BP35325 72 aa2.69□□□□□ -1.98
SIX4-202ENST00000554079 SPRR2AP35326 72 aa2.69□□□□□ -1.98
SIX4-202ENST00000554079 KRTAP6-2Q3LI66 62 aa2.67□□□□□ -1.98
SIX4-202ENST00000554079 KRTAP20-1Q3LI63 56 aa2.66□□□□□ -1.98
SIX4-202ENST00000554079 SPRR2DP22532 72 aa2.6□□□□□ -1.99
SIX4-202ENST00000554079 KRTAP19-3Q7Z4W3 81 aa2.6□□□□□ -1.99
SIX4-202ENST00000554079 KRTAP6-1Q3LI64 71 aa2.58□□□□□ -2
SIX4-202ENST00000554079 DSTQ03001 7570 aaKnown RBP2.47□□□□□ -2.01
SIX4-202ENST00000554079 MT3P25713 68 aa2.44□□□□□ -2.02
SIX4-202ENST00000554079 OBSCNQ5VST9 7968 aa2.4□□□□□ -2.02
SIX4-202ENST00000554079 LCE1FQ5T754 118 aa2.39□□□□□ -2.03
SIX4-202ENST00000554079 MT4P47944 62 aa2.26□□□□□ -2.05
SIX4-202ENST00000554079 KRTAP5-4Q6L8H1 288 aa2.25□□□□□ -2.05
SIX4-202ENST00000554079 HMCN1Q96RW7 5635 aa2.22□□□□□ -2.05
SIX4-202ENST00000554079 GPR98Q8WXG9 6306 aa2.13□□□□□ -2.07
SIX4-202ENST00000554079 KRTAP20-2Q3LI61 65 aa2.12□□□□□ -2.07
SIX4-202ENST00000554079 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
SIX4-202ENST00000554079 AHNAK2Q8IVF2 5795 aa2.09□□□□□ -2.07
SIX4-202ENST00000554079 KRTAP5-10Q6L8G5 202 aa2.05□□□□□ -2.08
SIX4-202ENST00000554079 KRTAP5-11Q6L8G4 156 aa2.01□□□□□ -2.09
SIX4-202ENST00000554079 KRTAP5-2Q701N4 177 aa1.98□□□□□ -2.09
SIX4-202ENST00000554079 MUC5ACP98088 5654 aa1.97□□□□□ -2.09
SIX4-202ENST00000554079 KRTAP5-7Q6L8G8 165 aa1.96□□□□□ -2.09
SIX4-202ENST00000554079 KRTAP21-1Q3LI58 79 aa1.93□□□□□ -2.1
SIX4-202ENST00000554079 KRTAP5-1Q6L8H4 278 aa1.88□□□□□ -2.11
SIX4-202ENST00000554079 LCE1CQ5T751 118 aa1.86□□□□□ -2.11
SIX4-202ENST00000554079 LCE1BQ5T7P3 118 aa1.86□□□□□ -2.11
SIX4-202ENST00000554079 KRTAP5-8O75690 187 aa1.84□□□□□ -2.11
SIX4-202ENST00000554079 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
SIX4-202ENST00000554079 MUC5BQ9HC84 5762 aaPredicted RBP1.71□□□□□ -2.14
SIX4-202ENST00000554079 AHNAKQ09666 5890 aaKnown RBP1.69□□□□□ -2.14
SIX4-202ENST00000554079 KRTAP4-4Q9BYR3 166 aa1.68□□□□□ -2.14
SIX4-202ENST00000554079 KRTAP21-2Q3LI59 83 aa1.64□□□□□ -2.15
SIX4-202ENST00000554079 PHGR1C9JFL3 82 aa1.25□□□□□ -2.21
SIX4-202ENST00000554079 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 58.7 ms