RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 KRTAP2-3P0C7H8 128 aa4.32□□□□□ -1.72
SHMT2-207ENST00000553837 KRTAP2-4Q9BYR9 128 aa4.32□□□□□ -1.72
SHMT2-207ENST00000553837 KRTAP2-1Q9BYU5 128 aa4.32□□□□□ -1.72
SHMT2-207ENST00000553837 KRTAP4-7Q9BYR0 210 aa4.29□□□□□ -1.72
SHMT2-207ENST00000553837 KRTAP9-6A8MVA2 160 aa4.29□□□□□ -1.72
SHMT2-207ENST00000553837 SYNE2Q8WXH0 6885 aaKnown RBP4.26□□□□□ -1.73
SHMT2-207ENST00000553837 MT1EP04732 61 aa4.24□□□□□ -1.73
SHMT2-207ENST00000553837 MACF1Q9UPN3 7388 aaKnown RBP4.22□□□□□ -1.73
SHMT2-207ENST00000553837 MT1LQ93083 61 aa4.22□□□□□ -1.73
SHMT2-207ENST00000553837 KRTAP19-4Q3LI73 84 aa4.17□□□□□ -1.74
SHMT2-207ENST00000553837 KRTAP6-3Q3LI67 103 aa4.16□□□□□ -1.74
SHMT2-207ENST00000553837 MUC12Q9UKN1 5478 aa4.07□□□□□ -1.76
SHMT2-207ENST00000553837 KRTAP4-3Q9BYR4 195 aa4.05□□□□□ -1.76
SHMT2-207ENST00000553837 LOC100996750A0A140TA64 210 aa4□□□□□ -1.77
SHMT2-207ENST00000553837 KRTAP5-9P26371 169 aa4□□□□□ -1.77
SHMT2-207ENST00000553837 KRTAP19-3Q7Z4W3 81 aa3.97□□□□□ -1.77
SHMT2-207ENST00000553837 MT1MQ8N339 61 aa3.97□□□□□ -1.77
SHMT2-207ENST00000553837 MT1GP13640 62 aa3.95□□□□□ -1.78
SHMT2-207ENST00000553837 NEBP20929 6669 aa3.94□□□□□ -1.78
SHMT2-207ENST00000553837 KRTAP12-4P60329 112 aa3.91□□□□□ -1.78
SHMT2-207ENST00000553837 SPRR2FQ96RM1 72 aa3.87□□□□□ -1.79
SHMT2-207ENST00000553837 LCE5AQ5TCM9 118 aa3.86□□□□□ -1.79
SHMT2-207ENST00000553837 MDN1Q9NU22 5596 aa3.83□□□□□ -1.8
SHMT2-207ENST00000553837 DSTQ03001 7570 aaKnown RBP3.81□□□□□ -1.8
SHMT2-207ENST00000553837 KRTAP20-1Q3LI63 56 aa3.79□□□□□ -1.8
SHMT2-207ENST00000553837 SPRR2EP22531 72 aa3.76□□□□□ -1.81
SHMT2-207ENST00000553837 SPRR2BP35325 72 aa3.76□□□□□ -1.81
SHMT2-207ENST00000553837 SPRR2AP35326 72 aa3.76□□□□□ -1.81
SHMT2-207ENST00000553837 LCE1AQ5T7P2 110 aa3.74□□□□□ -1.81
SHMT2-207ENST00000553837 KRTAP2-2Q9BYT5 123 aa3.68□□□□□ -1.82
SHMT2-207ENST00000553837 SPRR2DP22532 72 aa3.65□□□□□ -1.83
SHMT2-207ENST00000553837 LCE3BQ5TA77 95 aa3.61□□□□□ -1.83
SHMT2-207ENST00000553837 MT1AP04731 61 aa3.6□□□□□ -1.83
SHMT2-207ENST00000553837 KRTAP6-1Q3LI64 71 aa3.6□□□□□ -1.83
SHMT2-207ENST00000553837 KRTAP4-9Q9BYQ8 210 aa3.56□□□□□ -1.84
SHMT2-207ENST00000553837 KRTAP5-5Q701N2 237 aaPredicted RBP3.54□□□□□ -1.84
SHMT2-207ENST00000553837 SYNE1Q8NF91 8797 aaKnown RBP3.51□□□□□ -1.85
SHMT2-207ENST00000553837 PRM1P04553 51 aa3.51□□□□□ -1.85
SHMT2-207ENST00000553837 LCE3DQ9BYE3 92 aa3.51□□□□□ -1.85
SHMT2-207ENST00000553837 LCE3EQ5T5B0 92 aa3.5□□□□□ -1.85
SHMT2-207ENST00000553837 KRTAP9-4Q9BYQ2 154 aa3.34□□□□□ -1.87
SHMT2-207ENST00000553837 GPR98Q8WXG9 6306 aa3.32□□□□□ -1.88
SHMT2-207ENST00000553837 LCE4AQ5TA78 99 aa3.3□□□□□ -1.88
SHMT2-207ENST00000553837 KRTAP6-2Q3LI66 62 aa3.27□□□□□ -1.89
SHMT2-207ENST00000553837 KRTAP5-4Q6L8H1 288 aa3.24□□□□□ -1.89
SHMT2-207ENST00000553837 LCE1EQ5T753 118 aa3.22□□□□□ -1.89
SHMT2-207ENST00000553837 LCE1DQ5T752 114 aa3.19□□□□□ -1.9
SHMT2-207ENST00000553837 MT3P25713 68 aa3.15□□□□□ -1.9
SHMT2-207ENST00000553837 MT4P47944 62 aa3.15□□□□□ -1.91
SHMT2-207ENST00000553837 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.91
SHMT2-207ENST00000553837 OBSCNQ5VST9 7968 aa3.1□□□□□ -1.91
SHMT2-207ENST00000553837 KRTAP4-6Q9BYQ5 205 aa3.1□□□□□ -1.91
SHMT2-207ENST00000553837 AHNAK2Q8IVF2 5795 aa3.02□□□□□ -1.93
SHMT2-207ENST00000553837 KRTAP20-2Q3LI61 65 aa3.01□□□□□ -1.93
SHMT2-207ENST00000553837 KRTAP4-12Q9BQ66 201 aa3.01□□□□□ -1.93
SHMT2-207ENST00000553837 KRTAP5-10Q6L8G5 202 aa2.96□□□□□ -1.94
SHMT2-207ENST00000553837 KRTAP9-9Q9BYP9 154 aa2.96□□□□□ -1.94
SHMT2-207ENST00000553837 KRTAP5-3Q6L8H2 238 aa2.93□□□□□ -1.94
SHMT2-207ENST00000553837 KRTAP5-2Q701N4 177 aa2.93□□□□□ -1.94
SHMT2-207ENST00000553837 KRTAP5-7Q6L8G8 165 aa2.87□□□□□ -1.95
SHMT2-207ENST00000553837 LCE1FQ5T754 118 aa2.8□□□□□ -1.96
SHMT2-207ENST00000553837 KRTAP4-11Q9BYQ6 195 aa2.73□□□□□ -1.97
SHMT2-207ENST00000553837 MUC5ACP98088 5654 aa2.71□□□□□ -1.98
SHMT2-207ENST00000553837 KRTAP5-8O75690 187 aa2.63□□□□□ -1.99
SHMT2-207ENST00000553837 LCE1BQ5T7P3 118 aa2.58□□□□□ -2
SHMT2-207ENST00000553837 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
SHMT2-207ENST00000553837 AHNAKQ09666 5890 aaKnown RBP2.53□□□□□ -2
SHMT2-207ENST00000553837 KRTAP4-2Q9BYR5 136 aa2.53□□□□□ -2
SHMT2-207ENST00000553837 KRTAP5-1Q6L8H4 278 aa2.51□□□□□ -2.01
SHMT2-207ENST00000553837 LCE1CQ5T751 118 aa2.47□□□□□ -2.01
SHMT2-207ENST00000553837 KRTAP21-1Q3LI58 79 aa2.34□□□□□ -2.04
SHMT2-207ENST00000553837 KRTAP21-2Q3LI59 83 aa2.33□□□□□ -2.04
SHMT2-207ENST00000553837 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.33□□□□□ -2.04
SHMT2-207ENST00000553837 KRTAP4-4Q9BYR3 166 aa2.15□□□□□ -2.07
SHMT2-207ENST00000553837 KRTAP5-11Q6L8G4 156 aa2.13□□□□□ -2.07
SHMT2-207ENST00000553837 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
SHMT2-207ENST00000553837 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
SHMT2-207ENST00000553837 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 66.1 ms