RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 FAM240AA0A1B0GVK7 77 aa4.2□□□□□ -1.74
VPS29-211ENST00000553128 GTF2H5Q6ZYL4 71 aa4.2□□□□□ -1.74
VPS29-211ENST00000553128 CHKB-CPT1BH3BT56 60 aa4.16□□□□□ -1.74
VPS29-211ENST00000553128 SPINT4Q6UDR6 99 aa4.16□□□□□ -1.74
VPS29-211ENST00000553128 KRTAP5-8O75690 187 aa4.15□□□□□ -1.75
VPS29-211ENST00000553128 LINC00643Q86TS7 51 aa4.14□□□□□ -1.75
VPS29-211ENST00000553128 KRTAP12-1P59990 96 aa4.1□□□□□ -1.75
VPS29-211ENST00000553128 SPATA8Q6RVD6 105 aa4.09□□□□□ -1.75
VPS29-211ENST00000553128 KRTAP5-2Q701N4 177 aa4.06□□□□□ -1.76
VPS29-211ENST00000553128 KRTAP12-3P60328 96 aa4.03□□□□□ -1.76
VPS29-211ENST00000553128 SCGB1A1P11684 91 aa4.01□□□□□ -1.77
VPS29-211ENST00000553128 LOC105371267A0A1B0GV96 52 aa4□□□□□ -1.77
VPS29-211ENST00000553128 OBSCNQ5VST9 7968 aa3.99□□□□□ -1.77
VPS29-211ENST00000553128 TNP1P09430 55 aa3.98□□□□□ -1.77
VPS29-211ENST00000553128 A0A1B0GU33 70 aa3.9□□□□□ -1.79
VPS29-211ENST00000553128 KRTAP6-1Q3LI64 71 aa3.89□□□□□ -1.79
VPS29-211ENST00000553128 SERP1Q9Y6X1 66 aa3.88□□□□□ -1.79
VPS29-211ENST00000553128 SNURFQ9Y675 71 aa3.86□□□□□ -1.79
VPS29-211ENST00000553128 A8MU10 97 aa3.85□□□□□ -1.79
VPS29-211ENST00000553128 SEC61GP60059 68 aa3.85□□□□□ -1.79
VPS29-211ENST00000553128 MT1AP04731 61 aa3.83□□□□□ -1.8
VPS29-211ENST00000553128 KRTAP6-2Q3LI66 62 aa3.81□□□□□ -1.8
VPS29-211ENST00000553128 SPANXA2-OT1Q8N9U9 137 aa3.81□□□□□ -1.8
VPS29-211ENST00000553128 COA5Q86WW8 74 aa3.79□□□□□ -1.8
VPS29-211ENST00000553128 SMIM26A0A096LP01 95 aa3.75□□□□□ -1.81
VPS29-211ENST00000553128 PCP4L1A6NKN8 68 aa3.75□□□□□ -1.81
VPS29-211ENST00000553128 KRTAP5-1Q6L8H4 278 aa3.75□□□□□ -1.81
VPS29-211ENST00000553128 SMIM20Q8N5G0 67 aa3.72□□□□□ -1.81
VPS29-211ENST00000553128 LCE3CQ5T5A8 94 aa3.66□□□□□ -1.82
VPS29-211ENST00000553128 KRTAP25-1Q3LHN0 102 aa3.62□□□□□ -1.83
VPS29-211ENST00000553128 SERP2Q8N6R1 65 aa3.59□□□□□ -1.83
VPS29-211ENST00000553128 A0A1B0GU69 56 aa3.57□□□□□ -1.84
VPS29-211ENST00000553128 J3QR89 54 aa3.57□□□□□ -1.84
VPS29-211ENST00000553128 KRTAP9-6A8MVA2 160 aa3.55□□□□□ -1.84
VPS29-211ENST00000553128 A0A1B0GV90 55 aa3.51□□□□□ -1.85
VPS29-211ENST00000553128 PRAC1Q96KF2 57 aa3.51□□□□□ -1.85
VPS29-211ENST00000553128 MT3P25713 68 aa3.5□□□□□ -1.85
VPS29-211ENST00000553128 KRTAP5-11Q6L8G4 156 aa3.42□□□□□ -1.86
VPS29-211ENST00000553128 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.38□□□□□ -1.87
VPS29-211ENST00000553128 LCE1EQ5T753 118 aa3.35□□□□□ -1.87
VPS29-211ENST00000553128 H7BZZ5 65 aa3.32□□□□□ -1.88
VPS29-211ENST00000553128 NDUFAF8A1L188 74 aa3.31□□□□□ -1.88
VPS29-211ENST00000553128 PRR15LQ9BU68 103 aa3.3□□□□□ -1.88
VPS29-211ENST00000553128 LCE1BQ5T7P3 118 aa3.24□□□□□ -1.89
VPS29-211ENST00000553128 COX7CP15954 63 aa3.21□□□□□ -1.9
VPS29-211ENST00000553128 K7ERU9 68 aa3.2□□□□□ -1.9
VPS29-211ENST00000553128 UQCR11O14957 56 aa3.16□□□□□ -1.9
VPS29-211ENST00000553128 LINC01558Q9Y6Z2 57 aa3.16□□□□□ -1.9
VPS29-211ENST00000553128 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
VPS29-211ENST00000553128 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
VPS29-211ENST00000553128 MIR22HGQ0VDD5 57 aa3.07□□□□□ -1.92
VPS29-211ENST00000553128 K7ERS5 55 aa3.03□□□□□ -1.92
VPS29-211ENST00000553128 RPS28P62857 69 aaKnown RBP3.01□□□□□ -1.93
VPS29-211ENST00000553128 PHGR1C9JFL3 82 aa2.92□□□□□ -1.94
VPS29-211ENST00000553128 CDC42SE1Q9NRR8 79 aa2.85□□□□□ -1.95
VPS29-211ENST00000553128 ATP5EP56381 51 aaPredicted RBP2.84□□□□□ -1.95
VPS29-211ENST00000553128 CCDC179H3BU77 68 aa2.82□□□□□ -1.96
VPS29-211ENST00000553128 Q1T7F1 81 aa2.81□□□□□ -1.96
VPS29-211ENST00000553128 KRTAP4-4Q9BYR3 166 aa2.8□□□□□ -1.96
VPS29-211ENST00000553128 ROMO1P60602 79 aa2.79□□□□□ -1.96
VPS29-211ENST00000553128 ANAPC13Q9BS18 74 aa2.77□□□□□ -1.97
VPS29-211ENST00000553128 PSPHP1O15172 72 aa2.73□□□□□ -1.97
VPS29-211ENST00000553128 LCE3EQ5T5B0 92 aa2.65□□□□□ -1.99
VPS29-211ENST00000553128 TMEM258P61165 79 aa2.58□□□□□ -2
VPS29-211ENST00000553128 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
VPS29-211ENST00000553128 A6NED7 52 aa2.56□□□□□ -2
VPS29-211ENST00000553128 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
VPS29-211ENST00000553128 LCE3DQ9BYE3 92 aa2.51□□□□□ -2.01
VPS29-211ENST00000553128 V9GYY9 64 aa2.51□□□□□ -2.01
VPS29-211ENST00000553128 KRTAP21-1Q3LI58 79 aa2.19□□□□□ -2.06
VPS29-211ENST00000553128 LUZP6Q538Z0 58 aa2.1□□□□□ -2.07
VPS29-211ENST00000553128 PRO0628Q9UI54 55 aa1.97□□□□□ -2.09
VPS29-211ENST00000553128 MUC16Q8WXI7 14507 aa1.74□□□□□ -2.13
VPS29-211ENST00000553128 BRK1Q8WUW1 75 aa1.53□□□□□ -2.16
VPS29-211ENST00000553128 PRM1P04553 51 aa1.43□□□□□ -2.18
VPS29-211ENST00000553128 PMAIP1Q13794 54 aa1.37□□□□□ -2.19
VPS29-211ENST00000553128 KTN1-AS1Q86SY8 53 aa1.37□□□□□ -2.19
VPS29-211ENST00000553128 INE1O15225 51 aa0.87□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 75.2 ms