RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SSPOA2VEC9 5147 aa3.1□□□□□ -1.91
VPS13D-212ENST00000543766 SYNE2Q8WXH0 6885 aaKnown RBP3.1□□□□□ -1.91
VPS13D-212ENST00000543766 MT2AP02795 61 aa3.09□□□□□ -1.91
VPS13D-212ENST00000543766 KRTAP12-3P60328 96 aa3.09□□□□□ -1.91
VPS13D-212ENST00000543766 KRTAP9-8Q9BYQ0 159 aa3.09□□□□□ -1.91
VPS13D-212ENST00000543766 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
VPS13D-212ENST00000543766 MT1FP04733 61 aa3.08□□□□□ -1.92
VPS13D-212ENST00000543766 KRTAP19-8Q3LI54 63 aa3.07□□□□□ -1.92
VPS13D-212ENST00000543766 KRTAP2-3P0C7H8 128 aa3.07□□□□□ -1.92
VPS13D-212ENST00000543766 KRTAP2-4Q9BYR9 128 aa3.07□□□□□ -1.92
VPS13D-212ENST00000543766 KRTAP2-1Q9BYU5 128 aa3.07□□□□□ -1.92
VPS13D-212ENST00000543766 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.05□□□□□ -1.92
VPS13D-212ENST00000543766 MACF1Q9UPN3 7388 aaKnown RBP3.03□□□□□ -1.92
VPS13D-212ENST00000543766 FCGBPQ9Y6R7 5405 aaPredicted RBP3.01□□□□□ -1.93
VPS13D-212ENST00000543766 KRTAP4-12Q9BQ66 201 aa3□□□□□ -1.93
VPS13D-212ENST00000543766 MT1BP07438 61 aa2.98□□□□□ -1.93
VPS13D-212ENST00000543766 MT1XP80297 61 aa2.97□□□□□ -1.93
VPS13D-212ENST00000543766 KRTAP9-6A8MVA2 160 aa2.97□□□□□ -1.93
VPS13D-212ENST00000543766 KRTAP10-7P60409 375 aaPredicted RBP2.96□□□□□ -1.94
VPS13D-212ENST00000543766 LOC100996750A0A140TA64 210 aa2.95□□□□□ -1.94
VPS13D-212ENST00000543766 KRTAP4-6Q9BYQ5 205 aa2.95□□□□□ -1.94
VPS13D-212ENST00000543766 KRTAP4-8Q9BYQ9 185 aa2.94□□□□□ -1.94
VPS13D-212ENST00000543766 PRM1P04553 51 aa2.93□□□□□ -1.94
VPS13D-212ENST00000543766 KRTAP19-6Q3LI70 58 aa2.9□□□□□ -1.95
VPS13D-212ENST00000543766 KRTAP19-5Q3LI72 72 aa2.87□□□□□ -1.95
VPS13D-212ENST00000543766 MT3P25713 68 aa2.85□□□□□ -1.95
VPS13D-212ENST00000543766 MUC12Q9UKN1 5478 aa2.85□□□□□ -1.95
VPS13D-212ENST00000543766 KRTAP5-9P26371 169 aa2.79□□□□□ -1.96
VPS13D-212ENST00000543766 MDN1Q9NU22 5596 aa2.79□□□□□ -1.96
VPS13D-212ENST00000543766 DSTQ03001 7570 aaKnown RBP2.79□□□□□ -1.96
VPS13D-212ENST00000543766 NEBP20929 6669 aa2.7□□□□□ -1.98
VPS13D-212ENST00000543766 KRTAP4-8A0A0G2JLE6 195 aa2.69□□□□□ -1.98
VPS13D-212ENST00000543766 KRTAP4-7Q9BYR0 210 aa2.67□□□□□ -1.98
VPS13D-212ENST00000543766 KRTAP19-7Q3SYF9 63 aa2.66□□□□□ -1.98
VPS13D-212ENST00000543766 SPRR2FQ96RM1 72 aa2.65□□□□□ -1.99
VPS13D-212ENST00000543766 MT1LQ93083 61 aa2.59□□□□□ -1.99
VPS13D-212ENST00000543766 KRTAP4-11Q9BYQ6 195 aa2.57□□□□□ -2
VPS13D-212ENST00000543766 MT1EP04732 61 aa2.56□□□□□ -2
VPS13D-212ENST00000543766 SPRR2EP22531 72 aa2.55□□□□□ -2
VPS13D-212ENST00000543766 SPRR2BP35325 72 aa2.55□□□□□ -2
VPS13D-212ENST00000543766 SPRR2AP35326 72 aa2.55□□□□□ -2
VPS13D-212ENST00000543766 KRTAP4-9Q9BYQ8 210 aa2.55□□□□□ -2
VPS13D-212ENST00000543766 KRTAP5-5Q701N2 237 aaPredicted RBP2.5□□□□□ -2.01
VPS13D-212ENST00000543766 KRTAP4-3Q9BYR4 195 aa2.49□□□□□ -2.01
VPS13D-212ENST00000543766 KRTAP20-1Q3LI63 56 aa2.48□□□□□ -2.01
VPS13D-212ENST00000543766 MT1AP04731 61 aa2.46□□□□□ -2.02
VPS13D-212ENST00000543766 SPRR2DP22532 72 aa2.45□□□□□ -2.02
VPS13D-212ENST00000543766 KRTAP6-2Q3LI66 62 aa2.41□□□□□ -2.02
VPS13D-212ENST00000543766 KRTAP19-3Q7Z4W3 81 aa2.41□□□□□ -2.02
VPS13D-212ENST00000543766 MT1GP13640 62 aa2.4□□□□□ -2.03
VPS13D-212ENST00000543766 MT1MQ8N339 61 aa2.39□□□□□ -2.03
VPS13D-212ENST00000543766 KRTAP4-2Q9BYR5 136 aa2.38□□□□□ -2.03
VPS13D-212ENST00000543766 KRTAP5-4Q6L8H1 288 aa2.31□□□□□ -2.04
VPS13D-212ENST00000543766 MT4P47944 62 aa2.28□□□□□ -2.04
VPS13D-212ENST00000543766 LCE1CQ5T751 118 aa2.26□□□□□ -2.05
VPS13D-212ENST00000543766 LCE1BQ5T7P3 118 aa2.26□□□□□ -2.05
VPS13D-212ENST00000543766 GPR98Q8WXG9 6306 aa2.22□□□□□ -2.05
VPS13D-212ENST00000543766 KRTAP5-10Q6L8G5 202 aa2.21□□□□□ -2.06
VPS13D-212ENST00000543766 KRTAP6-1Q3LI64 71 aa2.2□□□□□ -2.06
VPS13D-212ENST00000543766 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
VPS13D-212ENST00000543766 KRTAP5-7Q6L8G8 165 aa2.18□□□□□ -2.06
VPS13D-212ENST00000543766 AHNAK2Q8IVF2 5795 aa2.13□□□□□ -2.07
VPS13D-212ENST00000543766 KRTAP5-3Q6L8H2 238 aa2.09□□□□□ -2.08
VPS13D-212ENST00000543766 KRTAP5-2Q701N4 177 aa2.05□□□□□ -2.08
VPS13D-212ENST00000543766 MUC5BQ9HC84 5762 aaPredicted RBP1.97□□□□□ -2.09
VPS13D-212ENST00000543766 KRTAP20-2Q3LI61 65 aa1.92□□□□□ -2.1
VPS13D-212ENST00000543766 AHNAKQ09666 5890 aaKnown RBP1.88□□□□□ -2.11
VPS13D-212ENST00000543766 KRTAP5-8O75690 187 aa1.84□□□□□ -2.12
VPS13D-212ENST00000543766 KRTAP5-11Q6L8G4 156 aa1.83□□□□□ -2.12
VPS13D-212ENST00000543766 MUC5ACP98088 5654 aa1.81□□□□□ -2.12
VPS13D-212ENST00000543766 KRTAP5-1Q6L8H4 278 aa1.75□□□□□ -2.13
VPS13D-212ENST00000543766 KRTAP21-1Q3LI58 79 aa1.69□□□□□ -2.14
VPS13D-212ENST00000543766 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.55□□□□□ -2.16
VPS13D-212ENST00000543766 KRTAP21-2Q3LI59 83 aa1.45□□□□□ -2.18
VPS13D-212ENST00000543766 KRTAP4-4Q9BYR3 166 aa1.43□□□□□ -2.18
VPS13D-212ENST00000543766 PHGR1C9JFL3 82 aa1.21□□□□□ -2.22
VPS13D-212ENST00000543766 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 13.8 ms