RNA–Protein interactions for RNA: ENST00000542112.5

SNHG1-219, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3 BASIC

Gene SNHG1, Length 780 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-219ENST00000542112 HMCN2Q8NDA2 5059 aa1.64□□□□□ -2.15
SNHG1-219ENST00000542112 KRTAP2-3P0C7H8 128 aa1.62□□□□□ -2.15
SNHG1-219ENST00000542112 KRTAP2-4Q9BYR9 128 aa1.62□□□□□ -2.15
SNHG1-219ENST00000542112 KRTAP2-1Q9BYU5 128 aa1.62□□□□□ -2.15
SNHG1-219ENST00000542112 M0R2T5 61 aa1.61□□□□□ -2.15
SNHG1-219ENST00000542112 LCE3AQ5TA76 89 aa1.61□□□□□ -2.15
SNHG1-219ENST00000542112 LCE3DQ9BYE3 92 aa1.61□□□□□ -2.15
SNHG1-219ENST00000542112 KRTAP12-3P60328 96 aa1.6□□□□□ -2.15
SNHG1-219ENST00000542112 RNF213Q63HN8 5207 aa1.57□□□□□ -2.16
SNHG1-219ENST00000542112 KRTAP5-1Q6L8H4 278 aa1.56□□□□□ -2.16
SNHG1-219ENST00000542112 SPRR2GQ9BYE4 73 aa1.54□□□□□ -2.16
SNHG1-219ENST00000542112 MUC2Q02817 5179 aa1.52□□□□□ -2.17
SNHG1-219ENST00000542112 MT1HP80294 61 aa1.52□□□□□ -2.17
SNHG1-219ENST00000542112 FAT4Q6V0I7 4981 aa1.51□□□□□ -2.17
SNHG1-219ENST00000542112 HMCN1Q96RW7 5635 aa1.51□□□□□ -2.17
SNHG1-219ENST00000542112 UBR4Q5T4S7 5183 aa1.51□□□□□ -2.17
SNHG1-219ENST00000542112 KRTAP5-4Q6L8H1 288 aa1.5□□□□□ -2.17
SNHG1-219ENST00000542112 KRTAP4-4Q9BYR3 166 aa1.5□□□□□ -2.17
SNHG1-219ENST00000542112 MT2AP02795 61 aa1.48□□□□□ -2.17
SNHG1-219ENST00000542112 KRTAP12-4P60329 112 aa1.48□□□□□ -2.17
SNHG1-219ENST00000542112 MT1FP04733 61 aa1.47□□□□□ -2.17
SNHG1-219ENST00000542112 KRTAP5-5Q701N2 237 aaPredicted RBP1.47□□□□□ -2.17
SNHG1-219ENST00000542112 KRTAP6-3Q3LI67 103 aa1.46□□□□□ -2.18
SNHG1-219ENST00000542112 KRTAP19-8Q3LI54 63 aa1.43□□□□□ -2.18
SNHG1-219ENST00000542112 KRTAP19-5Q3LI72 72 aa1.43□□□□□ -2.18
SNHG1-219ENST00000542112 MT1BP07438 61 aa1.42□□□□□ -2.18
SNHG1-219ENST00000542112 LCE1CQ5T751 118 aa1.39□□□□□ -2.19
SNHG1-219ENST00000542112 LCE1BQ5T7P3 118 aa1.39□□□□□ -2.19
SNHG1-219ENST00000542112 OBSCNQ5VST9 7968 aa1.36□□□□□ -2.19
SNHG1-219ENST00000542112 MT1XP80297 61 aa1.36□□□□□ -2.19
SNHG1-219ENST00000542112 KRTAP5-2Q701N4 177 aa1.36□□□□□ -2.19
SNHG1-219ENST00000542112 KRTAP4-3Q9BYR4 195 aa1.36□□□□□ -2.19
SNHG1-219ENST00000542112 MT1AP04731 61 aa1.35□□□□□ -2.19
SNHG1-219ENST00000542112 USH2AO75445 5202 aa1.35□□□□□ -2.19
SNHG1-219ENST00000542112 MT1EP04732 61 aa1.33□□□□□ -2.2
SNHG1-219ENST00000542112 KRTAP19-6Q3LI70 58 aa1.31□□□□□ -2.2
SNHG1-219ENST00000542112 SSPOA2VEC9 5147 aa1.3□□□□□ -2.2
SNHG1-219ENST00000542112 KRTAP5-8O75690 187 aa1.29□□□□□ -2.2
SNHG1-219ENST00000542112 PRM1P04553 51 aa1.29□□□□□ -2.2
SNHG1-219ENST00000542112 MT1LQ93083 61 aa1.29□□□□□ -2.2
SNHG1-219ENST00000542112 FCGBPQ9Y6R7 5405 aaPredicted RBP1.25□□□□□ -2.21
SNHG1-219ENST00000542112 KRTAP19-7Q3SYF9 63 aa1.23□□□□□ -2.21
SNHG1-219ENST00000542112 KMT2DO14686 5537 aa1.21□□□□□ -2.22
SNHG1-219ENST00000542112 SPRR2AP35326 72 aa1.2□□□□□ -2.22
SNHG1-219ENST00000542112 CRCT1Q9UGL9 99 aa1.2□□□□□ -2.22
SNHG1-219ENST00000542112 SPRR2FQ96RM1 72 aa1.19□□□□□ -2.22
SNHG1-219ENST00000542112 SPRR2BP35325 72 aa1.18□□□□□ -2.22
SNHG1-219ENST00000542112 KRTAP5-7Q6L8G8 165 aa1.15□□□□□ -2.23
SNHG1-219ENST00000542112 FSIP2Q5CZC0 6907 aa1.15□□□□□ -2.23
SNHG1-219ENST00000542112 SPRR2DP22532 72 aa1.14□□□□□ -2.23
SNHG1-219ENST00000542112 KRTAP6-2Q3LI66 62 aa1.14□□□□□ -2.23
SNHG1-219ENST00000542112 KRTAP19-3Q7Z4W3 81 aa1.12□□□□□ -2.23
SNHG1-219ENST00000542112 MUC12Q9UKN1 5478 aa1.12□□□□□ -2.23
SNHG1-219ENST00000542112 MT1GP13640 62 aa1.11□□□□□ -2.23
SNHG1-219ENST00000542112 SPRR2EP22531 72 aa1.11□□□□□ -2.23
SNHG1-219ENST00000542112 MT1MQ8N339 61 aa1.11□□□□□ -2.23
SNHG1-219ENST00000542112 SYNE1Q8NF91 8797 aaKnown RBP1.09□□□□□ -2.23
SNHG1-219ENST00000542112 MACF1Q9UPN3 7388 aaKnown RBP1.08□□□□□ -2.24
SNHG1-219ENST00000542112 MDN1Q9NU22 5596 aa1.05□□□□□ -2.24
SNHG1-219ENST00000542112 SYNE2Q8WXH0 6885 aaKnown RBP1.03□□□□□ -2.24
SNHG1-219ENST00000542112 MUC19Q7Z5P9 8384 aa1□□□□□ -2.25
SNHG1-219ENST00000542112 NEBP20929 6669 aa0.98□□□□□ -2.25
SNHG1-219ENST00000542112 DSTQ03001 7570 aaKnown RBP0.98□□□□□ -2.25
SNHG1-219ENST00000542112 KRTAP6-1Q3LI64 71 aa0.98□□□□□ -2.25
SNHG1-219ENST00000542112 KRTAP21-2Q3LI59 83 aa0.96□□□□□ -2.26
SNHG1-219ENST00000542112 KRTAP21-1Q3LI58 79 aa0.95□□□□□ -2.26
SNHG1-219ENST00000542112 KRTAP20-1Q3LI63 56 aa0.91□□□□□ -2.26
SNHG1-219ENST00000542112 GPR98Q8WXG9 6306 aa0.9□□□□□ -2.27
SNHG1-219ENST00000542112 KRTAP20-2Q3LI61 65 aa0.89□□□□□ -2.27
SNHG1-219ENST00000542112 MT4P47944 62 aa0.86□□□□□ -2.27
SNHG1-219ENST00000542112 KRTAP5-10Q6L8G5 202 aa0.85□□□□□ -2.27
SNHG1-219ENST00000542112 AHNAK2Q8IVF2 5795 aa0.8□□□□□ -2.28
SNHG1-219ENST00000542112 MUC5BQ9HC84 5762 aaPredicted RBP0.8□□□□□ -2.28
SNHG1-219ENST00000542112 AHNAKQ09666 5890 aaKnown RBP0.77□□□□□ -2.29
SNHG1-219ENST00000542112 MUC5ACP98088 5654 aa0.75□□□□□ -2.29
SNHG1-219ENST00000542112 PHGR1C9JFL3 82 aa0.55□□□□□ -2.32
SNHG1-219ENST00000542112 MUC16Q8WXI7 14507 aa0.46□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms