RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 KRTAP4-3Q9BYR4 195 aa4.75□□□□□ -1.65
PTPN1-202ENST00000541713 LOC100996750A0A140TA64 210 aa4.71□□□□□ -1.66
PTPN1-202ENST00000541713 MT1LQ93083 61 aa4.64□□□□□ -1.67
PTPN1-202ENST00000541713 MT1EP04732 61 aa4.63□□□□□ -1.67
PTPN1-202ENST00000541713 MT1GP13640 62 aa4.61□□□□□ -1.67
PTPN1-202ENST00000541713 SYNE2Q8WXH0 6885 aaKnown RBP4.6□□□□□ -1.67
PTPN1-202ENST00000541713 MACF1Q9UPN3 7388 aaKnown RBP4.55□□□□□ -1.68
PTPN1-202ENST00000541713 MDN1Q9NU22 5596 aa4.48□□□□□ -1.69
PTPN1-202ENST00000541713 SPRR2FQ96RM1 72 aa4.48□□□□□ -1.69
PTPN1-202ENST00000541713 KRTAP19-6Q3LI70 58 aa4.43□□□□□ -1.7
PTPN1-202ENST00000541713 KRTAP2-3P0C7H8 128 aa4.38□□□□□ -1.71
PTPN1-202ENST00000541713 KRTAP2-4Q9BYR9 128 aa4.38□□□□□ -1.71
PTPN1-202ENST00000541713 KRTAP2-1Q9BYU5 128 aa4.38□□□□□ -1.71
PTPN1-202ENST00000541713 MT1MQ8N339 61 aa4.36□□□□□ -1.71
PTPN1-202ENST00000541713 KRTAP19-3Q7Z4W3 81 aa4.34□□□□□ -1.72
PTPN1-202ENST00000541713 LCE3BQ5TA77 95 aa4.33□□□□□ -1.72
PTPN1-202ENST00000541713 KRTAP4-9Q9BYQ8 210 aa4.32□□□□□ -1.72
PTPN1-202ENST00000541713 KRTAP9-6A0A140TA67 174 aa4.29□□□□□ -1.72
PTPN1-202ENST00000541713 KRTAP12-4P60329 112 aa4.22□□□□□ -1.73
PTPN1-202ENST00000541713 LCE4AQ5TA78 99 aa4.12□□□□□ -1.75
PTPN1-202ENST00000541713 LCE5AQ5TCM9 118 aa4.12□□□□□ -1.75
PTPN1-202ENST00000541713 KRTAP9-2Q9BYQ4 174 aa4.11□□□□□ -1.75
PTPN1-202ENST00000541713 KRTAP6-1Q3LI64 71 aa4.06□□□□□ -1.76
PTPN1-202ENST00000541713 KRTAP19-4Q3LI73 84 aa4.04□□□□□ -1.76
PTPN1-202ENST00000541713 SPRR2EP22531 72 aa4.01□□□□□ -1.77
PTPN1-202ENST00000541713 SPRR2BP35325 72 aa4.01□□□□□ -1.77
PTPN1-202ENST00000541713 SPRR2AP35326 72 aa4.01□□□□□ -1.77
PTPN1-202ENST00000541713 KRTAP9-9Q9BYP9 154 aa3.97□□□□□ -1.77
PTPN1-202ENST00000541713 KRTAP9-4Q9BYQ2 154 aa3.97□□□□□ -1.77
PTPN1-202ENST00000541713 KRTAP9-7A8MTY7 169 aa3.96□□□□□ -1.78
PTPN1-202ENST00000541713 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
PTPN1-202ENST00000541713 LCE3DQ9BYE3 92 aa3.87□□□□□ -1.79
PTPN1-202ENST00000541713 KRTAP2-2Q9BYT5 123 aa3.83□□□□□ -1.8
PTPN1-202ENST00000541713 MT1AP04731 61 aa3.8□□□□□ -1.8
PTPN1-202ENST00000541713 SPRR2DP22532 72 aa3.8□□□□□ -1.8
PTPN1-202ENST00000541713 LCE3EQ5T5B0 92 aa3.77□□□□□ -1.81
PTPN1-202ENST00000541713 PRM1P04553 51 aa3.74□□□□□ -1.81
PTPN1-202ENST00000541713 LCE1FQ5T754 118 aa3.73□□□□□ -1.81
PTPN1-202ENST00000541713 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
PTPN1-202ENST00000541713 KRTAP5-9P26371 169 aa3.67□□□□□ -1.82
PTPN1-202ENST00000541713 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.64□□□□□ -1.83
PTPN1-202ENST00000541713 KRTAP5-5Q701N2 237 aaPredicted RBP3.63□□□□□ -1.83
PTPN1-202ENST00000541713 MT4P47944 62 aa3.58□□□□□ -1.84
PTPN1-202ENST00000541713 MT3P25713 68 aa3.49□□□□□ -1.85
PTPN1-202ENST00000541713 KRTAP4-6Q9BYQ5 205 aa3.47□□□□□ -1.85
PTPN1-202ENST00000541713 KRTAP4-12Q9BQ66 201 aa3.45□□□□□ -1.86
PTPN1-202ENST00000541713 NEBP20929 6669 aa3.43□□□□□ -1.86
PTPN1-202ENST00000541713 KRTAP6-3Q3LI67 103 aa3.42□□□□□ -1.86
PTPN1-202ENST00000541713 LCE1EQ5T753 118 aa3.4□□□□□ -1.86
PTPN1-202ENST00000541713 HMCN1Q96RW7 5635 aa3.33□□□□□ -1.88
PTPN1-202ENST00000541713 MUC19Q7Z5P9 8384 aa3.31□□□□□ -1.88
PTPN1-202ENST00000541713 LCE1DQ5T752 114 aa3.26□□□□□ -1.89
PTPN1-202ENST00000541713 KRTAP20-1Q3LI63 56 aa3.22□□□□□ -1.89
PTPN1-202ENST00000541713 LCE1BQ5T7P3 118 aa3.19□□□□□ -1.9
PTPN1-202ENST00000541713 KRTAP20-2Q3LI61 65 aa3.16□□□□□ -1.9
PTPN1-202ENST00000541713 KRTAP5-4Q6L8H1 288 aa3.13□□□□□ -1.91
PTPN1-202ENST00000541713 MUC5ACP98088 5654 aa3.12□□□□□ -1.91
PTPN1-202ENST00000541713 MUC5BQ9HC84 5762 aaPredicted RBP3.02□□□□□ -1.93
PTPN1-202ENST00000541713 KRTAP5-7Q6L8G8 165 aa3.01□□□□□ -1.93
PTPN1-202ENST00000541713 KRTAP4-11Q9BYQ6 195 aa2.94□□□□□ -1.94
PTPN1-202ENST00000541713 KRTAP5-2Q701N4 177 aa2.9□□□□□ -1.95
PTPN1-202ENST00000541713 KRTAP5-3Q6L8H2 238 aa2.87□□□□□ -1.95
PTPN1-202ENST00000541713 KRTAP5-10Q6L8G5 202 aa2.85□□□□□ -1.95
PTPN1-202ENST00000541713 AHNAKQ09666 5890 aaKnown RBP2.79□□□□□ -1.96
PTPN1-202ENST00000541713 GPR98Q8WXG9 6306 aa2.76□□□□□ -1.97
PTPN1-202ENST00000541713 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
PTPN1-202ENST00000541713 AHNAK2Q8IVF2 5795 aa2.72□□□□□ -1.97
PTPN1-202ENST00000541713 KRTAP4-2Q9BYR5 136 aa2.71□□□□□ -1.98
PTPN1-202ENST00000541713 KRTAP5-1Q6L8H4 278 aa2.6□□□□□ -1.99
PTPN1-202ENST00000541713 LCE1CQ5T751 118 aa2.52□□□□□ -2.01
PTPN1-202ENST00000541713 KRTAP21-2Q3LI59 83 aa2.49□□□□□ -2.01
PTPN1-202ENST00000541713 KRTAP5-8O75690 187 aa2.45□□□□□ -2.02
PTPN1-202ENST00000541713 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.22□□□□□ -2.05
PTPN1-202ENST00000541713 KRTAP21-1Q3LI58 79 aa2.15□□□□□ -2.07
PTPN1-202ENST00000541713 KRTAP5-11Q6L8G4 156 aa2.14□□□□□ -2.07
PTPN1-202ENST00000541713 PHGR1C9JFL3 82 aa1.9□□□□□ -2.1
PTPN1-202ENST00000541713 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 40.8 ms