RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 MT1LQ93083 61 aa3.31□□□□□ -1.88
CNOT4-212ENST00000541284 MT1EP04732 61 aa3.31□□□□□ -1.88
CNOT4-212ENST00000541284 KRTAP19-4Q3LI73 84 aa3.28□□□□□ -1.88
CNOT4-212ENST00000541284 KRTAP9-2Q9BYQ4 174 aa3.19□□□□□ -1.9
CNOT4-212ENST00000541284 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.18□□□□□ -1.9
CNOT4-212ENST00000541284 KRTAP9-6A0A140TA67 174 aa3.16□□□□□ -1.9
CNOT4-212ENST00000541284 KRTAP4-3Q9BYR4 195 aa3.15□□□□□ -1.91
CNOT4-212ENST00000541284 KRTAP5-9P26371 169 aa3.13□□□□□ -1.91
CNOT4-212ENST00000541284 LCE5AQ5TCM9 118 aa3.11□□□□□ -1.91
CNOT4-212ENST00000541284 KRTAP4-12Q9BQ66 201 aa3.1□□□□□ -1.91
CNOT4-212ENST00000541284 MUC12Q9UKN1 5478 aa3.1□□□□□ -1.91
CNOT4-212ENST00000541284 FSIP2Q5CZC0 6907 aa3.09□□□□□ -1.91
CNOT4-212ENST00000541284 MACF1Q9UPN3 7388 aaKnown RBP3.09□□□□□ -1.92
CNOT4-212ENST00000541284 MT1MQ8N339 61 aa3.08□□□□□ -1.92
CNOT4-212ENST00000541284 KRTAP19-3Q7Z4W3 81 aa3.06□□□□□ -1.92
CNOT4-212ENST00000541284 MT1GP13640 62 aa3.06□□□□□ -1.92
CNOT4-212ENST00000541284 KRTAP9-9Q9BYP9 154 aa3.04□□□□□ -1.92
CNOT4-212ENST00000541284 KRTAP9-4Q9BYQ2 154 aa3.04□□□□□ -1.92
CNOT4-212ENST00000541284 LCE3BQ5TA77 95 aa3□□□□□ -1.93
CNOT4-212ENST00000541284 KRTAP5-5Q701N2 237 aaPredicted RBP2.98□□□□□ -1.93
CNOT4-212ENST00000541284 MDN1Q9NU22 5596 aa2.94□□□□□ -1.94
CNOT4-212ENST00000541284 CRCT1Q9UGL9 99 aa2.94□□□□□ -1.94
CNOT4-212ENST00000541284 LCE1AQ5T7P2 110 aa2.93□□□□□ -1.94
CNOT4-212ENST00000541284 SYNE2Q8WXH0 6885 aaKnown RBP2.93□□□□□ -1.94
CNOT4-212ENST00000541284 LCE1DQ5T752 114 aa2.9□□□□□ -1.95
CNOT4-212ENST00000541284 DSTQ03001 7570 aaKnown RBP2.9□□□□□ -1.95
CNOT4-212ENST00000541284 KRTAP4-9Q9BYQ8 210 aa2.89□□□□□ -1.95
CNOT4-212ENST00000541284 SPRR2FQ96RM1 72 aa2.87□□□□□ -1.95
CNOT4-212ENST00000541284 KRTAP4-2Q9BYR5 136 aa2.85□□□□□ -1.95
CNOT4-212ENST00000541284 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
CNOT4-212ENST00000541284 KRTAP6-3Q3LI67 103 aa2.82□□□□□ -1.96
CNOT4-212ENST00000541284 KRTAP6-1Q3LI64 71 aa2.82□□□□□ -1.96
CNOT4-212ENST00000541284 MT1AP04731 61 aa2.78□□□□□ -1.96
CNOT4-212ENST00000541284 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
CNOT4-212ENST00000541284 KRTAP4-11Q9BYQ6 195 aa2.71□□□□□ -1.97
CNOT4-212ENST00000541284 SYNE1Q8NF91 8797 aaKnown RBP2.7□□□□□ -1.98
CNOT4-212ENST00000541284 NEBP20929 6669 aa2.68□□□□□ -1.98
CNOT4-212ENST00000541284 KRTAP5-3Q6L8H2 238 aa2.66□□□□□ -1.98
CNOT4-212ENST00000541284 SPRR2EP22531 72 aa2.65□□□□□ -1.99
CNOT4-212ENST00000541284 SPRR2BP35325 72 aa2.65□□□□□ -1.99
CNOT4-212ENST00000541284 SPRR2AP35326 72 aa2.65□□□□□ -1.99
CNOT4-212ENST00000541284 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
CNOT4-212ENST00000541284 KRTAP9-7A8MTY7 169 aa2.62□□□□□ -1.99
CNOT4-212ENST00000541284 LCE3EQ5T5B0 92 aa2.62□□□□□ -1.99
CNOT4-212ENST00000541284 SPRR2DP22532 72 aa2.55□□□□□ -2
CNOT4-212ENST00000541284 PRM1P04553 51 aa2.54□□□□□ -2
CNOT4-212ENST00000541284 KRTAP5-2Q701N4 177 aa2.54□□□□□ -2
CNOT4-212ENST00000541284 KRTAP6-2Q3LI66 62 aa2.49□□□□□ -2.01
CNOT4-212ENST00000541284 LCE4AQ5TA78 99 aa2.46□□□□□ -2.02
CNOT4-212ENST00000541284 MT3P25713 68 aa2.43□□□□□ -2.02
CNOT4-212ENST00000541284 GPR98Q8WXG9 6306 aa2.42□□□□□ -2.02
CNOT4-212ENST00000541284 OBSCNQ5VST9 7968 aa2.4□□□□□ -2.02
CNOT4-212ENST00000541284 KRTAP20-2Q3LI61 65 aa2.38□□□□□ -2.03
CNOT4-212ENST00000541284 HMCN1Q96RW7 5635 aa2.36□□□□□ -2.03
CNOT4-212ENST00000541284 KRTAP20-1Q3LI63 56 aa2.31□□□□□ -2.04
CNOT4-212ENST00000541284 KRTAP2-2Q9BYT5 123 aa2.29□□□□□ -2.04
CNOT4-212ENST00000541284 KRTAP5-10Q6L8G5 202 aa2.19□□□□□ -2.06
CNOT4-212ENST00000541284 MT4P47944 62 aa2.19□□□□□ -2.06
CNOT4-212ENST00000541284 LCE1EQ5T753 118 aa2.17□□□□□ -2.06
CNOT4-212ENST00000541284 MUC5ACP98088 5654 aa2.15□□□□□ -2.07
CNOT4-212ENST00000541284 LCE1FQ5T754 118 aa2.15□□□□□ -2.07
CNOT4-212ENST00000541284 KRTAP5-7Q6L8G8 165 aa2.14□□□□□ -2.07
CNOT4-212ENST00000541284 KRTAP5-1Q6L8H4 278 aa2.13□□□□□ -2.07
CNOT4-212ENST00000541284 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.07□□□□□ -2.08
CNOT4-212ENST00000541284 KRTAP5-8O75690 187 aa2.05□□□□□ -2.08
CNOT4-212ENST00000541284 LCE1CQ5T751 118 aa2.05□□□□□ -2.08
CNOT4-212ENST00000541284 LCE1BQ5T7P3 118 aa2.05□□□□□ -2.08
CNOT4-212ENST00000541284 AHNAK2Q8IVF2 5795 aa2.01□□□□□ -2.09
CNOT4-212ENST00000541284 MUC19Q7Z5P9 8384 aa1.95□□□□□ -2.1
CNOT4-212ENST00000541284 MUC5BQ9HC84 5762 aaPredicted RBP1.94□□□□□ -2.1
CNOT4-212ENST00000541284 KRTAP21-2Q3LI59 83 aa1.89□□□□□ -2.11
CNOT4-212ENST00000541284 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
CNOT4-212ENST00000541284 KRTAP5-11Q6L8G4 156 aa1.81□□□□□ -2.12
CNOT4-212ENST00000541284 KRTAP21-1Q3LI58 79 aa1.65□□□□□ -2.14
CNOT4-212ENST00000541284 KRTAP4-4Q9BYR3 166 aa1.63□□□□□ -2.15
CNOT4-212ENST00000541284 PHGR1C9JFL3 82 aa1.55□□□□□ -2.16
CNOT4-212ENST00000541284 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms