RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 KRTAP2-4Q9BYR9 128 aa4.28□□□□□ -1.72
RNF4-222ENST00000541204 KRTAP2-1Q9BYU5 128 aa4.28□□□□□ -1.72
RNF4-222ENST00000541204 MACF1Q9UPN3 7388 aaKnown RBP4.22□□□□□ -1.73
RNF4-222ENST00000541204 KRTAP4-3Q9BYR4 195 aa4.2□□□□□ -1.74
RNF4-222ENST00000541204 KRTAP19-4Q3LI73 84 aa4.19□□□□□ -1.74
RNF4-222ENST00000541204 SYNE2Q8WXH0 6885 aaKnown RBP4.17□□□□□ -1.74
RNF4-222ENST00000541204 DSTQ03001 7570 aaKnown RBP4.16□□□□□ -1.74
RNF4-222ENST00000541204 LOC100996750A0A140TA64 210 aa4.14□□□□□ -1.75
RNF4-222ENST00000541204 SPRR2FQ96RM1 72 aa4.13□□□□□ -1.75
RNF4-222ENST00000541204 KRTAP19-3Q7Z4W3 81 aa4.11□□□□□ -1.75
RNF4-222ENST00000541204 MT1GP13640 62 aa4.1□□□□□ -1.75
RNF4-222ENST00000541204 CRCT1Q9UGL9 99 aa4.09□□□□□ -1.75
RNF4-222ENST00000541204 MT1MQ8N339 61 aa4.09□□□□□ -1.75
RNF4-222ENST00000541204 KRTAP9-2Q9BYQ4 174 aa4.08□□□□□ -1.76
RNF4-222ENST00000541204 MDN1Q9NU22 5596 aa4.02□□□□□ -1.77
RNF4-222ENST00000541204 LCE5AQ5TCM9 118 aa3.98□□□□□ -1.77
RNF4-222ENST00000541204 KRTAP12-4P60329 112 aa3.84□□□□□ -1.8
RNF4-222ENST00000541204 LCE1AQ5T7P2 110 aa3.83□□□□□ -1.8
RNF4-222ENST00000541204 SYNE1Q8NF91 8797 aaKnown RBP3.8□□□□□ -1.8
RNF4-222ENST00000541204 SPRR2EP22531 72 aa3.8□□□□□ -1.8
RNF4-222ENST00000541204 SPRR2BP35325 72 aa3.8□□□□□ -1.8
RNF4-222ENST00000541204 SPRR2AP35326 72 aa3.8□□□□□ -1.8
RNF4-222ENST00000541204 KRTAP5-9P26371 169 aa3.8□□□□□ -1.8
RNF4-222ENST00000541204 LCE3BQ5TA77 95 aa3.76□□□□□ -1.81
RNF4-222ENST00000541204 KRTAP4-9Q9BYQ8 210 aa3.71□□□□□ -1.82
RNF4-222ENST00000541204 KRTAP6-1Q3LI64 71 aa3.7□□□□□ -1.82
RNF4-222ENST00000541204 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.65□□□□□ -1.83
RNF4-222ENST00000541204 SPRR2DP22532 72 aa3.63□□□□□ -1.83
RNF4-222ENST00000541204 MT1AP04731 61 aa3.61□□□□□ -1.83
RNF4-222ENST00000541204 KRTAP5-5Q701N2 237 aaPredicted RBP3.59□□□□□ -1.83
RNF4-222ENST00000541204 KRTAP9-6A0A140TA67 174 aa3.57□□□□□ -1.84
RNF4-222ENST00000541204 KRTAP6-3Q3LI67 103 aa3.57□□□□□ -1.84
RNF4-222ENST00000541204 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
RNF4-222ENST00000541204 OBSCNQ5VST9 7968 aa3.53□□□□□ -1.84
RNF4-222ENST00000541204 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
RNF4-222ENST00000541204 KRTAP9-7A8MTY7 169 aa3.46□□□□□ -1.86
RNF4-222ENST00000541204 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
RNF4-222ENST00000541204 NEBP20929 6669 aa3.43□□□□□ -1.86
RNF4-222ENST00000541204 PRM1P04553 51 aa3.41□□□□□ -1.86
RNF4-222ENST00000541204 KRTAP2-2Q9BYT5 123 aa3.4□□□□□ -1.87
RNF4-222ENST00000541204 LCE4AQ5TA78 99 aa3.39□□□□□ -1.87
RNF4-222ENST00000541204 KRTAP6-2Q3LI66 62 aa3.37□□□□□ -1.87
RNF4-222ENST00000541204 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
RNF4-222ENST00000541204 KRTAP9-9Q9BYP9 154 aa3.29□□□□□ -1.88
RNF4-222ENST00000541204 MT3P25713 68 aa3.27□□□□□ -1.89
RNF4-222ENST00000541204 MT4P47944 62 aa3.26□□□□□ -1.89
RNF4-222ENST00000541204 KRTAP4-6Q9BYQ5 205 aa3.23□□□□□ -1.89
RNF4-222ENST00000541204 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
RNF4-222ENST00000541204 KRTAP4-12Q9BQ66 201 aa3.16□□□□□ -1.9
RNF4-222ENST00000541204 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
RNF4-222ENST00000541204 KRTAP20-2Q3LI61 65 aa3.09□□□□□ -1.91
RNF4-222ENST00000541204 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
RNF4-222ENST00000541204 LCE1DQ5T752 114 aa3.05□□□□□ -1.92
RNF4-222ENST00000541204 KRTAP5-2Q701N4 177 aa2.98□□□□□ -1.93
RNF4-222ENST00000541204 KRTAP20-1Q3LI63 56 aa2.95□□□□□ -1.94
RNF4-222ENST00000541204 KRTAP5-3Q6L8H2 238 aa2.92□□□□□ -1.94
RNF4-222ENST00000541204 MUC5ACP98088 5654 aa2.78□□□□□ -1.96
RNF4-222ENST00000541204 LCE1BQ5T7P3 118 aa2.76□□□□□ -1.97
RNF4-222ENST00000541204 KRTAP4-11Q9BYQ6 195 aa2.63□□□□□ -1.99
RNF4-222ENST00000541204 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
RNF4-222ENST00000541204 KRTAP5-10Q6L8G5 202 aa2.58□□□□□ -2
RNF4-222ENST00000541204 KRTAP4-2Q9BYR5 136 aa2.58□□□□□ -2
RNF4-222ENST00000541204 LCE1CQ5T751 118 aa2.53□□□□□ -2
RNF4-222ENST00000541204 AHNAK2Q8IVF2 5795 aa2.51□□□□□ -2.01
RNF4-222ENST00000541204 KRTAP5-8O75690 187 aa2.48□□□□□ -2.01
RNF4-222ENST00000541204 KRTAP21-2Q3LI59 83 aa2.37□□□□□ -2.03
RNF4-222ENST00000541204 MUC5BQ9HC84 5762 aaPredicted RBP2.35□□□□□ -2.03
RNF4-222ENST00000541204 KRTAP5-7Q6L8G8 165 aa2.34□□□□□ -2.04
RNF4-222ENST00000541204 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.34□□□□□ -2.04
RNF4-222ENST00000541204 KRTAP4-4Q9BYR3 166 aa2.27□□□□□ -2.05
RNF4-222ENST00000541204 GPR98Q8WXG9 6306 aa2.26□□□□□ -2.05
RNF4-222ENST00000541204 KRTAP5-11Q6L8G4 156 aa2.18□□□□□ -2.06
RNF4-222ENST00000541204 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
RNF4-222ENST00000541204 KRTAP21-1Q3LI58 79 aa2.13□□□□□ -2.07
RNF4-222ENST00000541204 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
RNF4-222ENST00000541204 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
RNF4-222ENST00000541204 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 8.3 ms