RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 LCE3AQ5TA76 89 aa4.25□□□□□ -1.73
SYNE1-238ENST00000540663 MT1LQ93083 61 aa4.21□□□□□ -1.74
SYNE1-238ENST00000540663 MIR22HGQ0VDD5 57 aa4.2□□□□□ -1.74
SYNE1-238ENST00000540663 V9GYY9 64 aa4.2□□□□□ -1.74
SYNE1-238ENST00000540663 MT1MQ8N339 61 aa4.19□□□□□ -1.74
SYNE1-238ENST00000540663 K7ERS5 55 aa4.15□□□□□ -1.75
SYNE1-238ENST00000540663 Q1T7F1 81 aa4.14□□□□□ -1.75
SYNE1-238ENST00000540663 KRTAP25-1Q3LHN0 102 aa4.12□□□□□ -1.75
SYNE1-238ENST00000540663 PSPHP1O15172 72 aa4.11□□□□□ -1.75
SYNE1-238ENST00000540663 KRTAP12-3P60328 96 aa4.11□□□□□ -1.75
SYNE1-238ENST00000540663 KRTAP4-9Q9BYQ8 210 aa4.07□□□□□ -1.76
SYNE1-238ENST00000540663 LCE4AQ5TA78 99 aa4.06□□□□□ -1.76
SYNE1-238ENST00000540663 GPR98Q8WXG9 6306 aa4.03□□□□□ -1.76
SYNE1-238ENST00000540663 KRTAP4-3Q9BYR4 195 aa4.03□□□□□ -1.76
SYNE1-238ENST00000540663 HMCN1Q96RW7 5635 aa4.02□□□□□ -1.77
SYNE1-238ENST00000540663 LCE1DQ5T752 114 aa4.01□□□□□ -1.77
SYNE1-238ENST00000540663 A6NED7 52 aa4□□□□□ -1.77
SYNE1-238ENST00000540663 KRTAP23-1A1A580 65 aa3.99□□□□□ -1.77
SYNE1-238ENST00000540663 KRTAP5-4Q6L8H1 288 aa3.98□□□□□ -1.77
SYNE1-238ENST00000540663 RPS28P62857 69 aaKnown RBP3.96□□□□□ -1.78
SYNE1-238ENST00000540663 KRTAP19-4Q3LI73 84 aa3.96□□□□□ -1.78
SYNE1-238ENST00000540663 MT4P47944 62 aa3.95□□□□□ -1.78
SYNE1-238ENST00000540663 KRTAP4-7Q9BYR0 210 aa3.95□□□□□ -1.78
SYNE1-238ENST00000540663 CDC42SE1Q9NRR8 79 aa3.92□□□□□ -1.78
SYNE1-238ENST00000540663 AHNAK2Q8IVF2 5795 aa3.87□□□□□ -1.79
SYNE1-238ENST00000540663 KRTAP15-1Q3LI76 137 aa3.87□□□□□ -1.79
SYNE1-238ENST00000540663 ROMO1P60602 79 aa3.84□□□□□ -1.79
SYNE1-238ENST00000540663 KRTAP5-5Q701N2 237 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-238ENST00000540663 KRTAP4-6Q9BYQ5 205 aa3.84□□□□□ -1.79
SYNE1-238ENST00000540663 LCE3CQ5T5A8 94 aa3.79□□□□□ -1.8
SYNE1-238ENST00000540663 SPRR5A0A1B0GTR4 108 aa3.76□□□□□ -1.81
SYNE1-238ENST00000540663 KRTAP12-4P60329 112 aa3.76□□□□□ -1.81
SYNE1-238ENST00000540663 LOC100996750A0A140TA64 210 aa3.75□□□□□ -1.81
SYNE1-238ENST00000540663 KRTAP20-2Q3LI61 65 aa3.75□□□□□ -1.81
SYNE1-238ENST00000540663 KRTAP5-10Q6L8G5 202 aa3.72□□□□□ -1.81
SYNE1-238ENST00000540663 SYNE1Q8NF91 8797 aaKnown RBP3.66□□□□□ -1.82
SYNE1-238ENST00000540663 PRAC1Q96KF2 57 aa3.65□□□□□ -1.83
SYNE1-238ENST00000540663 KRTAP5-3Q6L8H2 238 aa3.63□□□□□ -1.83
SYNE1-238ENST00000540663 PRO0628Q9UI54 55 aa3.61□□□□□ -1.83
SYNE1-238ENST00000540663 MT1AP04731 61 aa3.6□□□□□ -1.83
SYNE1-238ENST00000540663 KRTAP5-7Q6L8G8 165 aa3.59□□□□□ -1.83
SYNE1-238ENST00000540663 KRTAP6-1Q3LI64 71 aa3.55□□□□□ -1.84
SYNE1-238ENST00000540663 KRTAP9-6A8MVA2 160 aa3.54□□□□□ -1.84
SYNE1-238ENST00000540663 KRTAP5-2Q701N4 177 aa3.5□□□□□ -1.85
SYNE1-238ENST00000540663 PMAIP1Q13794 54 aa3.48□□□□□ -1.85
SYNE1-238ENST00000540663 KRTAP9-4Q9BYQ2 154 aa3.46□□□□□ -1.86
SYNE1-238ENST00000540663 BRK1Q8WUW1 75 aa3.45□□□□□ -1.86
SYNE1-238ENST00000540663 KRTAP4-11Q9BYQ6 195 aa3.41□□□□□ -1.86
SYNE1-238ENST00000540663 KRTAP6-2Q3LI66 62 aa3.39□□□□□ -1.87
SYNE1-238ENST00000540663 MT3P25713 68 aa3.3□□□□□ -1.88
SYNE1-238ENST00000540663 KRTAP5-8O75690 187 aa3.28□□□□□ -1.88
SYNE1-238ENST00000540663 OBSCNQ5VST9 7968 aa3.24□□□□□ -1.89
SYNE1-238ENST00000540663 AHNAKQ09666 5890 aaKnown RBP3.21□□□□□ -1.9
SYNE1-238ENST00000540663 KTN1-AS1Q86SY8 53 aa3.2□□□□□ -1.9
SYNE1-238ENST00000540663 MUC5BQ9HC84 5762 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-238ENST00000540663 LUZP6Q538Z0 58 aa3.18□□□□□ -1.9
SYNE1-238ENST00000540663 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
SYNE1-238ENST00000540663 KRTAP9-9Q9BYP9 154 aa3.13□□□□□ -1.91
SYNE1-238ENST00000540663 KRTAP5-1Q6L8H4 278 aa3.11□□□□□ -1.91
SYNE1-238ENST00000540663 NDUFAF8A1L188 74 aa3.05□□□□□ -1.92
SYNE1-238ENST00000540663 LCE1EQ5T753 118 aa3.03□□□□□ -1.92
SYNE1-238ENST00000540663 KRTAP4-12Q9BQ66 201 aa3.01□□□□□ -1.93
SYNE1-238ENST00000540663 KRTAP4-2Q9BYR5 136 aa2.82□□□□□ -1.96
SYNE1-238ENST00000540663 LCE1CQ5T751 118 aa2.81□□□□□ -1.96
SYNE1-238ENST00000540663 LCE1BQ5T7P3 118 aa2.81□□□□□ -1.96
SYNE1-238ENST00000540663 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
SYNE1-238ENST00000540663 LCE3EQ5T5B0 92 aa2.59□□□□□ -1.99
SYNE1-238ENST00000540663 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.56□□□□□ -2
SYNE1-238ENST00000540663 KRTAP5-11Q6L8G4 156 aa2.54□□□□□ -2
SYNE1-238ENST00000540663 LCE1FQ5T754 118 aa2.52□□□□□ -2.01
SYNE1-238ENST00000540663 KRTAP21-2Q3LI59 83 aa2.34□□□□□ -2.03
SYNE1-238ENST00000540663 INE1O15225 51 aa2.28□□□□□ -2.04
SYNE1-238ENST00000540663 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
SYNE1-238ENST00000540663 KRTAP4-4Q9BYR3 166 aa2.1□□□□□ -2.07
SYNE1-238ENST00000540663 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
SYNE1-238ENST00000540663 PRM1P04553 51 aa1.94□□□□□ -2.1
SYNE1-238ENST00000540663 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
SYNE1-238ENST00000540663 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 32.3 ms