RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 MT1EP04732 61 aa6.87□□□□□ -1.31
TMEM260-203ENST00000539559 FCGBPQ9Y6R7 5405 aaPredicted RBP6.8□□□□□ -1.32
TMEM260-203ENST00000539559 LOC100996750A0A140TA64 210 aa6.76□□□□□ -1.33
TMEM260-203ENST00000539559 KRTAP4-3Q9BYR4 195 aa6.74□□□□□ -1.33
TMEM260-203ENST00000539559 KRTAP19-4Q3LI73 84 aa6.71□□□□□ -1.34
TMEM260-203ENST00000539559 KRTAP9-2Q9BYQ4 174 aa6.71□□□□□ -1.34
TMEM260-203ENST00000539559 MUC12Q9UKN1 5478 aa6.62□□□□□ -1.35
TMEM260-203ENST00000539559 MT1GP13640 62 aa6.61□□□□□ -1.35
TMEM260-203ENST00000539559 CRCT1Q9UGL9 99 aa6.6□□□□□ -1.35
TMEM260-203ENST00000539559 DSTQ03001 7570 aaKnown RBP6.52□□□□□ -1.37
TMEM260-203ENST00000539559 MACF1Q9UPN3 7388 aaKnown RBP6.47□□□□□ -1.37
TMEM260-203ENST00000539559 KRTAP19-3Q7Z4W3 81 aa6.46□□□□□ -1.37
TMEM260-203ENST00000539559 SPRR2FQ96RM1 72 aa6.46□□□□□ -1.38
TMEM260-203ENST00000539559 MT1MQ8N339 61 aa6.42□□□□□ -1.38
TMEM260-203ENST00000539559 KRTAP12-4P60329 112 aa6.35□□□□□ -1.39
TMEM260-203ENST00000539559 LCE5AQ5TCM9 118 aa6.31□□□□□ -1.4
TMEM260-203ENST00000539559 SYNE2Q8WXH0 6885 aaKnown RBP6.28□□□□□ -1.4
TMEM260-203ENST00000539559 KRTAP5-9P26371 169 aa6.23□□□□□ -1.41
TMEM260-203ENST00000539559 KRTAP4-9Q9BYQ8 210 aa6.21□□□□□ -1.42
TMEM260-203ENST00000539559 LCE3BQ5TA77 95 aa6.2□□□□□ -1.42
TMEM260-203ENST00000539559 SYNE1Q8NF91 8797 aaKnown RBP6.16□□□□□ -1.42
TMEM260-203ENST00000539559 LCE1AQ5T7P2 110 aa6.11□□□□□ -1.43
TMEM260-203ENST00000539559 MDN1Q9NU22 5596 aa6.05□□□□□ -1.44
TMEM260-203ENST00000539559 SPRR2EP22531 72 aa6.03□□□□□ -1.44
TMEM260-203ENST00000539559 SPRR2BP35325 72 aa6.03□□□□□ -1.44
TMEM260-203ENST00000539559 SPRR2AP35326 72 aa6.03□□□□□ -1.44
TMEM260-203ENST00000539559 KRTAP9-6A0A140TA67 174 aa6.02□□□□□ -1.45
TMEM260-203ENST00000539559 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.02□□□□□ -1.45
TMEM260-203ENST00000539559 KRTAP6-3Q3LI67 103 aa5.96□□□□□ -1.45
TMEM260-203ENST00000539559 KRTAP6-1Q3LI64 71 aa5.95□□□□□ -1.46
TMEM260-203ENST00000539559 SPRR2DP22532 72 aa5.8□□□□□ -1.48
TMEM260-203ENST00000539559 MT1AP04731 61 aa5.79□□□□□ -1.48
TMEM260-203ENST00000539559 KRTAP9-7A8MTY7 169 aa5.79□□□□□ -1.48
TMEM260-203ENST00000539559 LCE3DQ9BYE3 92 aa5.79□□□□□ -1.48
TMEM260-203ENST00000539559 OBSCNQ5VST9 7968 aa5.72□□□□□ -1.49
TMEM260-203ENST00000539559 LCE3EQ5T5B0 92 aa5.71□□□□□ -1.5
TMEM260-203ENST00000539559 KRTAP5-5Q701N2 237 aaPredicted RBP5.71□□□□□ -1.5
TMEM260-203ENST00000539559 PRM1P04553 51 aa5.68□□□□□ -1.5
TMEM260-203ENST00000539559 NEBP20929 6669 aa5.5□□□□□ -1.53
TMEM260-203ENST00000539559 KRTAP4-6Q9BYQ5 205 aa5.47□□□□□ -1.53
TMEM260-203ENST00000539559 KRTAP6-2Q3LI66 62 aa5.43□□□□□ -1.54
TMEM260-203ENST00000539559 KRTAP9-4Q9BYQ2 154 aa5.39□□□□□ -1.55
TMEM260-203ENST00000539559 KRTAP5-4Q6L8H1 288 aa5.27□□□□□ -1.57
TMEM260-203ENST00000539559 MT3P25713 68 aa5.14□□□□□ -1.59
TMEM260-203ENST00000539559 LCE4AQ5TA78 99 aa5.1□□□□□ -1.59
TMEM260-203ENST00000539559 KRTAP2-2Q9BYT5 123 aa5.07□□□□□ -1.6
TMEM260-203ENST00000539559 MT4P47944 62 aa5.05□□□□□ -1.6
TMEM260-203ENST00000539559 KRTAP20-1Q3LI63 56 aa4.96□□□□□ -1.62
TMEM260-203ENST00000539559 KRTAP20-2Q3LI61 65 aa4.94□□□□□ -1.62
TMEM260-203ENST00000539559 LCE1DQ5T752 114 aa4.88□□□□□ -1.63
TMEM260-203ENST00000539559 KRTAP5-2Q701N4 177 aa4.83□□□□□ -1.64
TMEM260-203ENST00000539559 HMCN1Q96RW7 5635 aa4.82□□□□□ -1.64
TMEM260-203ENST00000539559 KRTAP5-3Q6L8H2 238 aa4.73□□□□□ -1.65
TMEM260-203ENST00000539559 KRTAP4-12Q9BQ66 201 aa4.71□□□□□ -1.66
TMEM260-203ENST00000539559 KRTAP9-9Q9BYP9 154 aa4.63□□□□□ -1.67
TMEM260-203ENST00000539559 MUC5ACP98088 5654 aa4.51□□□□□ -1.69
TMEM260-203ENST00000539559 LCE1EQ5T753 118 aa4.37□□□□□ -1.71
TMEM260-203ENST00000539559 KRTAP4-11Q9BYQ6 195 aa4.33□□□□□ -1.72
TMEM260-203ENST00000539559 LCE1BQ5T7P3 118 aa4.3□□□□□ -1.72
TMEM260-203ENST00000539559 KRTAP4-2Q9BYR5 136 aa4.25□□□□□ -1.73
TMEM260-203ENST00000539559 KRTAP5-10Q6L8G5 202 aa4.19□□□□□ -1.74
TMEM260-203ENST00000539559 KRTAP5-1Q6L8H4 278 aa4.15□□□□□ -1.74
TMEM260-203ENST00000539559 LCE1CQ5T751 118 aa4.08□□□□□ -1.76
TMEM260-203ENST00000539559 AHNAK2Q8IVF2 5795 aa4.06□□□□□ -1.76
TMEM260-203ENST00000539559 KRTAP5-8O75690 187 aa4.03□□□□□ -1.76
TMEM260-203ENST00000539559 KRTAP5-7Q6L8G8 165 aa3.94□□□□□ -1.78
TMEM260-203ENST00000539559 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.83□□□□□ -1.8
TMEM260-203ENST00000539559 KRTAP21-2Q3LI59 83 aa3.77□□□□□ -1.81
TMEM260-203ENST00000539559 MUC19Q7Z5P9 8384 aa3.69□□□□□ -1.82
TMEM260-203ENST00000539559 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
TMEM260-203ENST00000539559 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
TMEM260-203ENST00000539559 GPR98Q8WXG9 6306 aa3.52□□□□□ -1.85
TMEM260-203ENST00000539559 KRTAP21-1Q3LI58 79 aa3.48□□□□□ -1.85
TMEM260-203ENST00000539559 MUC5BQ9HC84 5762 aaPredicted RBP3.46□□□□□ -1.86
TMEM260-203ENST00000539559 LCE1FQ5T754 118 aa3.11□□□□□ -1.91
TMEM260-203ENST00000539559 PHGR1C9JFL3 82 aa3.06□□□□□ -1.92
TMEM260-203ENST00000539559 AHNAKQ09666 5890 aaKnown RBP2.9□□□□□ -1.94
TMEM260-203ENST00000539559 MUC16Q8WXI7 14507 aa1.99□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 68.1 ms