RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 KRTAP4-9Q9BYQ8 210 aa6.61□□□□□ -1.35
CLIP1-211ENST00000539080 V9GYY9 64 aa6.6□□□□□ -1.35
CLIP1-211ENST00000539080 KRTAP12-3P60328 96 aa6.57□□□□□ -1.36
CLIP1-211ENST00000539080 K7ERS5 55 aa6.55□□□□□ -1.36
CLIP1-211ENST00000539080 LCE4AQ5TA78 99 aa6.55□□□□□ -1.36
CLIP1-211ENST00000539080 KRTAP25-1Q3LHN0 102 aa6.54□□□□□ -1.36
CLIP1-211ENST00000539080 Q1T7F1 81 aa6.53□□□□□ -1.36
CLIP1-211ENST00000539080 KRTAP4-3Q9BYR4 195 aa6.52□□□□□ -1.37
CLIP1-211ENST00000539080 LCE1DQ5T752 114 aa6.5□□□□□ -1.37
CLIP1-211ENST00000539080 PSPHP1O15172 72 aa6.49□□□□□ -1.37
CLIP1-211ENST00000539080 GPR98Q8WXG9 6306 aa6.46□□□□□ -1.38
CLIP1-211ENST00000539080 KRTAP5-4Q6L8H1 288 aa6.43□□□□□ -1.38
CLIP1-211ENST00000539080 MT4P47944 62 aa6.4□□□□□ -1.38
CLIP1-211ENST00000539080 KRTAP4-7Q9BYR0 210 aa6.38□□□□□ -1.39
CLIP1-211ENST00000539080 HMCN1Q96RW7 5635 aa6.34□□□□□ -1.39
CLIP1-211ENST00000539080 KRTAP23-1A1A580 65 aa6.33□□□□□ -1.4
CLIP1-211ENST00000539080 KRTAP19-4Q3LI73 84 aa6.31□□□□□ -1.4
CLIP1-211ENST00000539080 A6NED7 52 aa6.3□□□□□ -1.4
CLIP1-211ENST00000539080 KRTAP4-6Q9BYQ5 205 aa6.24□□□□□ -1.41
CLIP1-211ENST00000539080 RPS28P62857 69 aaKnown RBP6.2□□□□□ -1.42
CLIP1-211ENST00000539080 KRTAP5-5Q701N2 237 aaPredicted RBP6.19□□□□□ -1.42
CLIP1-211ENST00000539080 CDC42SE1Q9NRR8 79 aa6.19□□□□□ -1.42
CLIP1-211ENST00000539080 KRTAP15-1Q3LI76 137 aa6.16□□□□□ -1.42
CLIP1-211ENST00000539080 ROMO1P60602 79 aa6.08□□□□□ -1.44
CLIP1-211ENST00000539080 AHNAK2Q8IVF2 5795 aa6.06□□□□□ -1.44
CLIP1-211ENST00000539080 SPRR5A0A1B0GTR4 108 aa6.06□□□□□ -1.44
CLIP1-211ENST00000539080 LCE3CQ5T5A8 94 aa6.06□□□□□ -1.44
CLIP1-211ENST00000539080 LOC100996750A0A140TA64 210 aa6.05□□□□□ -1.44
CLIP1-211ENST00000539080 PCP4P48539 62 aa6.05□□□□□ -1.44
CLIP1-211ENST00000539080 KRTAP20-2Q3LI61 65 aa6.04□□□□□ -1.44
CLIP1-211ENST00000539080 KRTAP12-4P60329 112 aa6.03□□□□□ -1.44
CLIP1-211ENST00000539080 KRTAP5-10Q6L8G5 202 aa6.03□□□□□ -1.44
CLIP1-211ENST00000539080 SVIPQ8NHG7 77 aa5.95□□□□□ -1.46
CLIP1-211ENST00000539080 KRTAP5-3Q6L8H2 238 aa5.9□□□□□ -1.46
CLIP1-211ENST00000539080 SYNE1Q8NF91 8797 aaKnown RBP5.82□□□□□ -1.48
CLIP1-211ENST00000539080 KRTAP5-7Q6L8G8 165 aa5.81□□□□□ -1.48
CLIP1-211ENST00000539080 MT1AP04731 61 aa5.77□□□□□ -1.49
CLIP1-211ENST00000539080 KRTAP6-1Q3LI64 71 aa5.7□□□□□ -1.5
CLIP1-211ENST00000539080 KRTAP9-6A8MVA2 160 aa5.68□□□□□ -1.5
CLIP1-211ENST00000539080 KRTAP5-2Q701N4 177 aa5.64□□□□□ -1.51
CLIP1-211ENST00000539080 H3BS24 57 aa5.59□□□□□ -1.51
CLIP1-211ENST00000539080 KRTAP9-4Q9BYQ2 154 aa5.58□□□□□ -1.52
CLIP1-211ENST00000539080 KRTAP4-11Q9BYQ6 195 aa5.51□□□□□ -1.53
CLIP1-211ENST00000539080 KRTAP6-2Q3LI66 62 aa5.44□□□□□ -1.54
CLIP1-211ENST00000539080 BRK1Q8WUW1 75 aa5.39□□□□□ -1.55
CLIP1-211ENST00000539080 KRTAP5-8O75690 187 aa5.32□□□□□ -1.56
CLIP1-211ENST00000539080 MT3P25713 68 aa5.29□□□□□ -1.56
CLIP1-211ENST00000539080 OBSCNQ5VST9 7968 aa5.15□□□□□ -1.59
CLIP1-211ENST00000539080 KRTAP4-12Q9BQ66 201 aa5.11□□□□□ -1.59
CLIP1-211ENST00000539080 PMAIP1Q13794 54 aa5.08□□□□□ -1.6
CLIP1-211ENST00000539080 KRTAP9-9Q9BYP9 154 aa5.06□□□□□ -1.6
CLIP1-211ENST00000539080 KRTAP5-1Q6L8H4 278 aa5.04□□□□□ -1.6
CLIP1-211ENST00000539080 MUC5BQ9HC84 5762 aaPredicted RBP5□□□□□ -1.61
CLIP1-211ENST00000539080 MUC5ACP98088 5654 aa4.99□□□□□ -1.61
CLIP1-211ENST00000539080 AHNAKQ09666 5890 aaKnown RBP4.95□□□□□ -1.62
CLIP1-211ENST00000539080 LCE1EQ5T753 118 aa4.88□□□□□ -1.63
CLIP1-211ENST00000539080 PRAC1Q96KF2 57 aa4.85□□□□□ -1.63
CLIP1-211ENST00000539080 PRO0628Q9UI54 55 aa4.68□□□□□ -1.66
CLIP1-211ENST00000539080 A0A0A0MQY5 61 aa4.65□□□□□ -1.67
CLIP1-211ENST00000539080 KRTAP4-2Q9BYR5 136 aa4.56□□□□□ -1.68
CLIP1-211ENST00000539080 LCE1CQ5T751 118 aa4.52□□□□□ -1.69
CLIP1-211ENST00000539080 LCE1BQ5T7P3 118 aa4.52□□□□□ -1.69
CLIP1-211ENST00000539080 KTN1-AS1Q86SY8 53 aa4.5□□□□□ -1.69
CLIP1-211ENST00000539080 LCE3DQ9BYE3 92 aa4.38□□□□□ -1.71
CLIP1-211ENST00000539080 LUZP6Q538Z0 58 aa4.18□□□□□ -1.74
CLIP1-211ENST00000539080 LCE3EQ5T5B0 92 aa4.12□□□□□ -1.75
CLIP1-211ENST00000539080 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.12□□□□□ -1.75
CLIP1-211ENST00000539080 KRTAP5-11Q6L8G4 156 aa4.08□□□□□ -1.76
CLIP1-211ENST00000539080 LCE1FQ5T754 118 aa3.99□□□□□ -1.77
CLIP1-211ENST00000539080 KRTAP21-2Q3LI59 83 aa3.77□□□□□ -1.81
CLIP1-211ENST00000539080 PHGR1C9JFL3 82 aa3.51□□□□□ -1.85
CLIP1-211ENST00000539080 NDUFAF8A1L188 74 aa3.5□□□□□ -1.85
CLIP1-211ENST00000539080 KRTAP4-4Q9BYR3 166 aa3.39□□□□□ -1.87
CLIP1-211ENST00000539080 MUC19Q7Z5P9 8384 aa3.16□□□□□ -1.9
CLIP1-211ENST00000539080 PRM1P04553 51 aa3.08□□□□□ -1.92
CLIP1-211ENST00000539080 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
CLIP1-211ENST00000539080 INE1O15225 51 aa2.66□□□□□ -1.98
CLIP1-211ENST00000539080 MUC16Q8WXI7 14507 aa2.26□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 102.8 ms