RNA–Protein interactions for RNA: ENST00000536145.3

CPSF7-215, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-215ENST00000536145 KRTAP9-8Q9BYQ0 159 aa2.66□□□□□ -1.98
CPSF7-215ENST00000536145 RNF213Q63HN8 5207 aa2.65□□□□□ -1.99
CPSF7-215ENST00000536145 KRTAP10-10P60014 251 aa2.61□□□□□ -1.99
CPSF7-215ENST00000536145 KRTAP10-7P60409 375 aaPredicted RBP2.6□□□□□ -1.99
CPSF7-215ENST00000536145 KRTAP5-3Q6L8H2 238 aa2.6□□□□□ -1.99
CPSF7-215ENST00000536145 LCE3CQ5T5A8 94 aa2.55□□□□□ -2
CPSF7-215ENST00000536145 KRTAP2-3P0C7H8 128 aa2.53□□□□□ -2
CPSF7-215ENST00000536145 KRTAP2-4Q9BYR9 128 aa2.53□□□□□ -2
CPSF7-215ENST00000536145 KRTAP2-1Q9BYU5 128 aa2.53□□□□□ -2
CPSF7-215ENST00000536145 KRTAP19-5Q3LI72 72 aa2.52□□□□□ -2.01
CPSF7-215ENST00000536145 KRTAP9-6A8MVA2 160 aa2.51□□□□□ -2.01
CPSF7-215ENST00000536145 KRTAP19-7Q3SYF9 63 aa2.41□□□□□ -2.02
CPSF7-215ENST00000536145 CRCT1Q9UGL9 99 aa2.35□□□□□ -2.03
CPSF7-215ENST00000536145 MT1LQ93083 61 aa2.34□□□□□ -2.03
CPSF7-215ENST00000536145 KRTAP19-6Q3LI70 58 aa2.32□□□□□ -2.04
CPSF7-215ENST00000536145 MT1EP04732 61 aa2.31□□□□□ -2.04
CPSF7-215ENST00000536145 MT3P25713 68 aa2.28□□□□□ -2.04
CPSF7-215ENST00000536145 USH2AO75445 5202 aa2.26□□□□□ -2.05
CPSF7-215ENST00000536145 FSIP2Q5CZC0 6907 aa2.25□□□□□ -2.05
CPSF7-215ENST00000536145 SSPOA2VEC9 5147 aa2.23□□□□□ -2.05
CPSF7-215ENST00000536145 LCE1AQ5T7P2 110 aa2.2□□□□□ -2.06
CPSF7-215ENST00000536145 KRTAP12-4P60329 112 aa2.18□□□□□ -2.06
CPSF7-215ENST00000536145 KRTAP4-3Q9BYR4 195 aa2.17□□□□□ -2.06
CPSF7-215ENST00000536145 MT1MQ8N339 61 aa2.15□□□□□ -2.07
CPSF7-215ENST00000536145 FCGBPQ9Y6R7 5405 aaPredicted RBP2.14□□□□□ -2.07
CPSF7-215ENST00000536145 MT1GP13640 62 aa2.14□□□□□ -2.07
CPSF7-215ENST00000536145 KRTAP6-3Q3LI67 103 aa2.1□□□□□ -2.07
CPSF7-215ENST00000536145 KRTAP19-3Q7Z4W3 81 aa2.1□□□□□ -2.07
CPSF7-215ENST00000536145 MT1AP04731 61 aa2.09□□□□□ -2.07
CPSF7-215ENST00000536145 MACF1Q9UPN3 7388 aaKnown RBP2.07□□□□□ -2.08
CPSF7-215ENST00000536145 KMT2DO14686 5537 aa2.07□□□□□ -2.08
CPSF7-215ENST00000536145 KRTAP5-9P26371 169 aa2.05□□□□□ -2.08
CPSF7-215ENST00000536145 KRTAP5-5Q701N2 237 aaPredicted RBP2.05□□□□□ -2.08
CPSF7-215ENST00000536145 SPRR2FQ96RM1 72 aa2.05□□□□□ -2.08
CPSF7-215ENST00000536145 SYNE2Q8WXH0 6885 aaKnown RBP2.02□□□□□ -2.09
CPSF7-215ENST00000536145 KRTAP2-2Q9BYT5 123 aa2□□□□□ -2.09
CPSF7-215ENST00000536145 LCE1FQ5T754 118 aa1.99□□□□□ -2.09
CPSF7-215ENST00000536145 SPRR2EP22531 72 aa1.98□□□□□ -2.09
CPSF7-215ENST00000536145 SPRR2BP35325 72 aa1.98□□□□□ -2.09
CPSF7-215ENST00000536145 SPRR2AP35326 72 aa1.98□□□□□ -2.09
CPSF7-215ENST00000536145 LCE3EQ5T5B0 92 aa1.98□□□□□ -2.09
CPSF7-215ENST00000536145 KRTAP6-1Q3LI64 71 aa1.97□□□□□ -2.09
CPSF7-215ENST00000536145 PRM1P04553 51 aa1.96□□□□□ -2.1
CPSF7-215ENST00000536145 LCE3DQ9BYE3 92 aa1.96□□□□□ -2.1
CPSF7-215ENST00000536145 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.92□□□□□ -2.1
CPSF7-215ENST00000536145 MUC12Q9UKN1 5478 aa1.92□□□□□ -2.1
CPSF7-215ENST00000536145 KRTAP5-11Q6L8G4 156 aa1.91□□□□□ -2.1
CPSF7-215ENST00000536145 SPRR2DP22532 72 aa1.9□□□□□ -2.11
CPSF7-215ENST00000536145 KRTAP6-2Q3LI66 62 aa1.87□□□□□ -2.11
CPSF7-215ENST00000536145 KRTAP20-1Q3LI63 56 aa1.85□□□□□ -2.11
CPSF7-215ENST00000536145 NEBP20929 6669 aa1.85□□□□□ -2.11
CPSF7-215ENST00000536145 SYNE1Q8NF91 8797 aaKnown RBP1.83□□□□□ -2.12
CPSF7-215ENST00000536145 MDN1Q9NU22 5596 aa1.8□□□□□ -2.12
CPSF7-215ENST00000536145 LCE1EQ5T753 118 aa1.77□□□□□ -2.13
CPSF7-215ENST00000536145 DSTQ03001 7570 aaKnown RBP1.74□□□□□ -2.13
CPSF7-215ENST00000536145 KRTAP5-4Q6L8H1 288 aa1.69□□□□□ -2.14
CPSF7-215ENST00000536145 KRTAP5-1Q6L8H4 278 aa1.69□□□□□ -2.14
CPSF7-215ENST00000536145 MT4P47944 62 aa1.67□□□□□ -2.14
CPSF7-215ENST00000536145 KRTAP4-4Q9BYR3 166 aa1.63□□□□□ -2.15
CPSF7-215ENST00000536145 KRTAP20-2Q3LI61 65 aa1.59□□□□□ -2.15
CPSF7-215ENST00000536145 KRTAP5-2Q701N4 177 aa1.54□□□□□ -2.16
CPSF7-215ENST00000536145 OBSCNQ5VST9 7968 aa1.53□□□□□ -2.17
CPSF7-215ENST00000536145 KRTAP5-10Q6L8G5 202 aa1.47□□□□□ -2.17
CPSF7-215ENST00000536145 HMCN1Q96RW7 5635 aa1.47□□□□□ -2.17
CPSF7-215ENST00000536145 MUC5ACP98088 5654 aa1.41□□□□□ -2.18
CPSF7-215ENST00000536145 KRTAP5-8O75690 187 aa1.36□□□□□ -2.19
CPSF7-215ENST00000536145 AHNAK2Q8IVF2 5795 aa1.35□□□□□ -2.19
CPSF7-215ENST00000536145 KRTAP5-7Q6L8G8 165 aa1.34□□□□□ -2.19
CPSF7-215ENST00000536145 KRTAP21-1Q3LI58 79 aa1.33□□□□□ -2.2
CPSF7-215ENST00000536145 LCE1CQ5T751 118 aa1.31□□□□□ -2.2
CPSF7-215ENST00000536145 LCE1BQ5T7P3 118 aa1.31□□□□□ -2.2
CPSF7-215ENST00000536145 KRTAP21-2Q3LI59 83 aa1.29□□□□□ -2.2
CPSF7-215ENST00000536145 GPR98Q8WXG9 6306 aa1.28□□□□□ -2.2
CPSF7-215ENST00000536145 MUC5BQ9HC84 5762 aaPredicted RBP1.08□□□□□ -2.24
CPSF7-215ENST00000536145 MUC19Q7Z5P9 8384 aa1.05□□□□□ -2.24
CPSF7-215ENST00000536145 AHNAKQ09666 5890 aaKnown RBP1.03□□□□□ -2.24
CPSF7-215ENST00000536145 PHGR1C9JFL3 82 aa0.96□□□□□ -2.26
CPSF7-215ENST00000536145 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 73.8 ms